DiffLogo: A comparative visualisation of sequence motifs


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Documentation for package ‘DiffLogo’ version 1.6.0

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Alphabet built alphabet
ASN ASN alphabet
createDiffLogoObject DiffLogo object
differenceOfICs normalized information content differences
diffLogo Draw DiffLogo
diffLogoFromPwm Draw DiffLogo from PWM
diffLogoTable Draw DiffLogo-table
DNA DNA alphabet
getPwmFromAlignment Create PWM from alignment
informationContent information content
lossOfAbsICDifferences the change of information content
normalizedDifferenceOfProbabilities normalized probability differences
probabilities probabilities
RNA RNA alphabet
seqLogo Draw sequence logo
shannonDivergence shannon divergence
sumOfAbsICDifferences sum of absolute information content differences
sumOfAbsProbabilityDifferences sum of absolute probability differences
sumProbabilities sum of probabilities, i.e. 1.0