Alphabet | built alphabet |
ASN | ASN alphabet |
createDiffLogoObject | DiffLogo object |
differenceOfICs | normalized information content differences |
diffLogo | Draw DiffLogo |
diffLogoFromPwm | Draw DiffLogo from PWM |
diffLogoTable | Draw DiffLogo-table |
DNA | DNA alphabet |
getPwmFromAlignment | Create PWM from alignment |
informationContent | information content |
lossOfAbsICDifferences | the change of information content |
normalizedDifferenceOfProbabilities | normalized probability differences |
probabilities | probabilities |
RNA | RNA alphabet |
seqLogo | Draw sequence logo |
shannonDivergence | shannon divergence |
sumOfAbsICDifferences | sum of absolute information content differences |
sumOfAbsProbabilityDifferences | sum of absolute probability differences |
sumProbabilities | sum of probabilities, i.e. 1.0 |