clin.crc | Colon cancer clinical dataset |
cnvgr.18.auto | Probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0 |
comp.heatmap | A comprehensive heatmap function that plots Chromosome and Cytoband heatmaps |
cyto.cin4heatmap | Cytoband CIN T-test output |
cytobands.cin | Cytoband CIN dataset |
extract.genes.in.cyto.regions | Given an input of cytobands, it outputs a list of genes that are present in the cytoband regions |
geneAnno | CDS gene annotation file |
grl.data | Output of segmentation algorithm |
hg18.ucsctrack | Human reference annotation file |
run.cin.chr | Calculate chromosome CIN |
run.cin.cyto | Calculate cytoband CIN |
snpgr.18.auto | Probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0 |
ttest.cyto.cin.heatmap | Performs T test on cytoband level CIN data, and plots heatmap |