Chromosome Instability Index


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Documentation for package ‘CINdex’ version 1.4.0

Help Pages

clin.crc Colon cancer clinical dataset
cnvgr.18.auto Probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0
comp.heatmap A comprehensive heatmap function that plots Chromosome and Cytoband heatmaps
cyto.cin4heatmap Cytoband CIN T-test output
cytobands.cin Cytoband CIN dataset
extract.genes.in.cyto.regions Given an input of cytobands, it outputs a list of genes that are present in the cytoband regions
geneAnno CDS gene annotation file
grl.data Output of segmentation algorithm
hg18.ucsctrack Human reference annotation file
run.cin.chr Calculate chromosome CIN
run.cin.cyto Calculate cytoband CIN
snpgr.18.auto Probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0
ttest.cyto.cin.heatmap Performs T test on cytoband level CIN data, and plots heatmap