Cytometry dATa anALYSis Tools


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Documentation for package ‘CATALYST’ version 1.1.1

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applyCutoffs Single-cell debarcoding (2)
applyCutoffs-method Single-cell debarcoding (2)
assignPrelim Single-cell debarcoding (1)
assignPrelim-method Single-cell debarcoding (1)
bc_ids Extraction and replacement methods for objects of class 'dbFrame'
bc_ids-method Extraction and replacement methods for objects of class 'dbFrame'
bc_key Extraction and replacement methods for objects of class 'dbFrame'
bc_key-method Extraction and replacement methods for objects of class 'dbFrame'
compCytof Compensate CyTOF experiment
compCytof-method Compensate CyTOF experiment
computeSpillmat Compute spillover matrx
computeSpillmat-method Compute spillover matrx
concatFCS FCS file concatination
concatFCS-method FCS file concatination
counts Extraction and replacement methods for objects of class 'dbFrame'
counts-method Extraction and replacement methods for objects of class 'dbFrame'
data Example data sets
dbFrame Debarcoding frame class
dbFrame-class Debarcoding frame class
dbFrame-methods Extraction and replacement methods for objects of class 'dbFrame'
deltas Extraction and replacement methods for objects of class 'dbFrame'
deltas-method Extraction and replacement methods for objects of class 'dbFrame'
estCutoffs Estimation of distance separation cutoffs
estCutoffs-method Estimation of distance separation cutoffs
estTrim Estimation of optimal trim value
estTrim-method Estimation of optimal trim value
exprs Extraction and replacement methods for objects of class 'dbFrame'
exprs-method Extraction and replacement methods for objects of class 'dbFrame'
mhl_cutoff Extraction and replacement methods for objects of class 'dbFrame'
mhl_cutoff-method Extraction and replacement methods for objects of class 'dbFrame'
mhl_cutoff<- Extraction and replacement methods for objects of class 'dbFrame'
mhl_cutoff<--method Extraction and replacement methods for objects of class 'dbFrame'
mhl_dists Extraction and replacement methods for objects of class 'dbFrame'
mhl_dists-method Extraction and replacement methods for objects of class 'dbFrame'
mp_cells Example data sets
normCytof Bead-based normalization
normCytof-method Bead-based normalization
normed_bcs Extraction and replacement methods for objects of class 'dbFrame'
normed_bcs-method Extraction and replacement methods for objects of class 'dbFrame'
outFCS Write population-wise FCS files
outFCS-method Write population-wise FCS files
plotEvents Event plot
plotEvents-method Event plot
plotMahal Biaxial plot
plotMahal-method Biaxial plot
plotSpillmat Spillover matrix heat map
plotYields Yield plot
plotYields-method Yield plot
raw_data Example data sets
sample_ff Example data sets
sample_key Example data sets
sep_cutoffs Extraction and replacement methods for objects of class 'dbFrame'
sep_cutoffs-method Extraction and replacement methods for objects of class 'dbFrame'
sep_cutoffs<- Extraction and replacement methods for objects of class 'dbFrame'
sep_cutoffs<--method Extraction and replacement methods for objects of class 'dbFrame'
ss_exp Example data sets
yields Extraction and replacement methods for objects of class 'dbFrame'
yields-method Extraction and replacement methods for objects of class 'dbFrame'