applyCutoffs | Single-cell debarcoding (2) |
applyCutoffs-method | Single-cell debarcoding (2) |
assignPrelim | Single-cell debarcoding (1) |
assignPrelim-method | Single-cell debarcoding (1) |
bc_ids | Extraction and replacement methods for objects of class 'dbFrame' |
bc_ids-method | Extraction and replacement methods for objects of class 'dbFrame' |
bc_key | Extraction and replacement methods for objects of class 'dbFrame' |
bc_key-method | Extraction and replacement methods for objects of class 'dbFrame' |
compCytof | Compensate CyTOF experiment |
compCytof-method | Compensate CyTOF experiment |
computeSpillmat | Compute spillover matrx |
computeSpillmat-method | Compute spillover matrx |
concatFCS | FCS file concatination |
concatFCS-method | FCS file concatination |
counts | Extraction and replacement methods for objects of class 'dbFrame' |
counts-method | Extraction and replacement methods for objects of class 'dbFrame' |
data | Example data sets |
dbFrame | Debarcoding frame class |
dbFrame-class | Debarcoding frame class |
dbFrame-methods | Extraction and replacement methods for objects of class 'dbFrame' |
deltas | Extraction and replacement methods for objects of class 'dbFrame' |
deltas-method | Extraction and replacement methods for objects of class 'dbFrame' |
estCutoffs | Estimation of distance separation cutoffs |
estCutoffs-method | Estimation of distance separation cutoffs |
estTrim | Estimation of optimal trim value |
estTrim-method | Estimation of optimal trim value |
exprs | Extraction and replacement methods for objects of class 'dbFrame' |
exprs-method | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_cutoff | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_cutoff-method | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_cutoff<- | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_cutoff<--method | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_dists | Extraction and replacement methods for objects of class 'dbFrame' |
mhl_dists-method | Extraction and replacement methods for objects of class 'dbFrame' |
mp_cells | Example data sets |
normCytof | Bead-based normalization |
normCytof-method | Bead-based normalization |
normed_bcs | Extraction and replacement methods for objects of class 'dbFrame' |
normed_bcs-method | Extraction and replacement methods for objects of class 'dbFrame' |
outFCS | Write population-wise FCS files |
outFCS-method | Write population-wise FCS files |
plotEvents | Event plot |
plotEvents-method | Event plot |
plotMahal | Biaxial plot |
plotMahal-method | Biaxial plot |
plotSpillmat | Spillover matrix heat map |
plotYields | Yield plot |
plotYields-method | Yield plot |
raw_data | Example data sets |
sample_ff | Example data sets |
sample_key | Example data sets |
sep_cutoffs | Extraction and replacement methods for objects of class 'dbFrame' |
sep_cutoffs-method | Extraction and replacement methods for objects of class 'dbFrame' |
sep_cutoffs<- | Extraction and replacement methods for objects of class 'dbFrame' |
sep_cutoffs<--method | Extraction and replacement methods for objects of class 'dbFrame' |
ss_exp | Example data sets |
yields | Extraction and replacement methods for objects of class 'dbFrame' |
yields-method | Extraction and replacement methods for objects of class 'dbFrame' |