Code for using BridgeDb identifier mapping framework from within R


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Documentation for package ‘BridgeDbR’ version 1.10.2

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BridgeDbR-package BridgeDBR Package.
BridgeDbR BridgeDBR Package.
fullNameExists Determines if the full name corresponds to any known data source.
getBridgeNames Method to list the BridgeDb identifier mapping file names as available from the download site.
getDatabase Downloads a identifier mapping database for the given organism.
getDataSource Return a DataSource object based on either a name or system code.
getFullName Return the name of a particular data source.
getMatchingSources Return a list of data sources of which the identifier pattern matches the identifier given.
getOrganismCode Return the code of a particular organism.
getSystemCode Return the system code of a particular data source.
loadDatabase Loads a BridgeDb identifier mapping database (.bridge file) as an IDMapper Java-Object.
map Converts one identifier into other identifiers for the given target data source.
registerDataSource Registers a new DataSource based on the given name or system code.
systemCodeExists Determines if the system code corresponds to any known data source.