Statistical analysis of sequins


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Documentation for package ‘Anaquin’ version 1.2.0

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analysis Return type of analysis
analysis-method Return type of analysis
AnaquinData Create Anaquin dataset
input Return input concentration
input-method Return input concentration
label Return classified labels
label-method Return classified labels
measured Return measured abundance
measured-method Return measured abundance
plotLinear Plot linear model for sequins
plotLODR Create Limit-of-Detection Ratio (LODR) plot
plotLogistic Plot logistic model for sequins
plotMA Create MA plot
plotROC Create ROC plot
pval Return p-value probability
pval-method Return p-value probability
qval Return q-value probability
qval-method Return q-value probability
ratio Return ratio
ratio-method Return ratio
RnaQuin.aggregate Aggregate isoform concentration
RnaQuin.genes Filter RnaQuin genes
RnaQuin.iso2gen Convert RnaQuin isoforms to genes
RnaQuin.isoforms Filter RnaQuin isoforms
RnaQuinMixtureA RnaQuin mixture A
RnaQuinMixtureB RnaQuin mixture B
score Return scores
score-method Return scores
seqs Return sequin names
seqs-method Return sequin names
std Return standard deviation
std-method Return standard deviation
UserGuideData_5.4.5.1 Section 5.4.5.1 Assembly Dataset
UserGuideData_5.4.6.3 Gene expression (RnaQuin)
UserGuideData_5.6.3 Differential expression (RnaQuin)