analysis | Return type of analysis |
analysis-method | Return type of analysis |
AnaquinData | Create Anaquin dataset |
input | Return input concentration |
input-method | Return input concentration |
label | Return classified labels |
label-method | Return classified labels |
measured | Return measured abundance |
measured-method | Return measured abundance |
plotLinear | Plot linear model for sequins |
plotLODR | Create Limit-of-Detection Ratio (LODR) plot |
plotLogistic | Plot logistic model for sequins |
plotMA | Create MA plot |
plotROC | Create ROC plot |
pval | Return p-value probability |
pval-method | Return p-value probability |
qval | Return q-value probability |
qval-method | Return q-value probability |
ratio | Return ratio |
ratio-method | Return ratio |
RnaQuin.aggregate | Aggregate isoform concentration |
RnaQuin.genes | Filter RnaQuin genes |
RnaQuin.iso2gen | Convert RnaQuin isoforms to genes |
RnaQuin.isoforms | Filter RnaQuin isoforms |
RnaQuinMixtureA | RnaQuin mixture A |
RnaQuinMixtureB | RnaQuin mixture B |
score | Return scores |
score-method | Return scores |
seqs | Return sequin names |
seqs-method | Return sequin names |
std | Return standard deviation |
std-method | Return standard deviation |
UserGuideData_5.4.5.1 | Section 5.4.5.1 Assembly Dataset |
UserGuideData_5.4.6.3 | Gene expression (RnaQuin) |
UserGuideData_5.6.3 | Differential expression (RnaQuin) |