## ----style-knitr, eval=TRUE, echo=FALSE, results="asis"------------------ BiocStyle::latex() ## ----setup, include=FALSE, cache=FALSE----------------------------------- library(knitr) opts_chunk$set(fig.align='center', cache=TRUE,par=TRUE) knit_hooks$set(par=function(before, options, envir){ if (before && options$fig.show!='none') par(mar=c(1,1,.1,.1),cex.lab=1,cex.axis=1,mgp=c(2,.7,0),tcl=-.3) }, crop=hook_pdfcrop) ## ----install, eval=FALSE------------------------------------------------- ## source("http://bioconductor.org/biocLite.R") ## biocLite("ELMER.data") ## ----loa, cache=TRUE----------------------------------------------------- library("ELMER.data") library("GenomicRanges") ## ----Probes.motif, cache=TRUE-------------------------------------------- data("Probes.motif") dim(Probes.motif) str(Probes.motif) ## ----human.TF, cache=TRUE------------------------------------------------ data("human.TF") dim(human.TF) head(human.TF) ## ----Combined.TSS, cache=TRUE-------------------------------------------- data("Combined.TSS") Combined.TSS ## ----motif.relavent.TFs, cache=TRUE-------------------------------------- data("motif.relavent.TFs") motif.relavent.TFs[1:2] ## ----Union.enhancer, cache=TRUE------------------------------------------ data("Union.enhancer") Union.enhancer ## ----finalsession, cache=TRUE-------------------------------------------- sessionInfo()