## ----style, echo = FALSE, results = 'asis'------------------------------- BiocStyle::markdown() ## ----global_options, include=FALSE--------------------------------------- knitr::opts_chunk$set(fig.width=10, fig.height=7, warning=FALSE, message=FALSE) options(width=110) ## ---- eval=FALSE--------------------------------------------------------- ## ## load ABAEnrichment software package ## require(ABAEnrichment) ## ## get name and superstructures of brain region 4679 ## get_name(4679) ## get_superstructures(4679) ## get_name(get_superstructures(4679)) ## ------------------------------------------------------------------------ ## load package require(ABAData) ## require averaged gene expression data (microarray) from adult human brain regions data(dataset_adult) ## look at first lines head(dataset_adult) ## ------------------------------------------------------------------------ ## require averaged gene expression data (RNA-seq) for 5 age categories data(dataset_5_stages) ## look at first lines head(dataset_5_stages) ## ------------------------------------------------------------------------ ## require developmental effect score for genes in brain regions data(dataset_dev_effect) ## look at first lines head(dataset_dev_effect)