To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer5")

In most cases, you don't need to download the package archive at all.

BSgenome.Drerio.UCSC.danRer5

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Drerio.UCSC.danRer5.

Full genome sequences for Danio rerio (UCSC version danRer5)

Bioconductor version: 3.4

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Drerio.UCSC.danRer5")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Drerio.UCSC.danRer5")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, BSgenome, Danio_rerio, Genetics
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
LinkingTo
Suggests GenomicFeatures
SystemRequirements
Enhances
URL
Depends On Me BSgenome.Drerio.UCSC.danRer5.masked
Imports Me BSgenome.Drerio.UCSC.danRer5.masked
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Drerio.UCSC.danRer5_1.4.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Package Short Url http://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer5/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: