CHANGES IN VERSION 1.5.13 ------------------------ NEW FEATURES * In this version, the methods for missing values impuation from the package imp4p have been disabled because they are still under development. They will be available later. CHANGES IN VERSION 1.5.11 ------------------------ NEW FEATURES * When the user wants to convert a text file into a MSnset dataset, the options are available only when a file has been loaded. CHANGES IN VERSION 1.5.9 ------------------------ NEW FEATURES * This version is compliant with the version 1.5.9 of DAPAR CHANGES IN VERSION 1.5.7 ------------------------- NEW FEATURES * The R commands of all the operations made with prostar are available in the logSession tab. This allows the user to create a script to automatize the analysis of a dataset. CHANGES IN VERSION 1.5.5 ------------------------- NEW FEATURES * Prostar integrates the imp4p package for the imputation of missing values, w.r.t MNAR / MCAR * In the export tool, the user can select the columns of metadata he wants to keep CHANGES IN VERSION 1.5.3 ------------------------- NEW FEATURES * Prostar handles the format xlsx for Excel files CHANGES IN VERSION 1.5.1 ------------------------- NEW FEATURES * Add modules BUG FIXES CHANGES IN VERSION 1.4.11 ------------------------- NEW FEATURES BUG FIXES * If the user convert a first text file and then wants to convert another one, the widgets were not all updated and this caused a crash when saving to MSnSet.This bug has been fixed. CHANGES IN VERSION 1.4.10 ------------------------- NEW FEATURES * Import of .tsv files * The name of the study appears now in the title of the datasets versions * When the user exports his datasets, the name of the study is automatically suggested in the text field BUG FIXES * A bug when choosing the id for converting a text file into a MSnSet file has been fixed CHANGES IN VERSION 1.4.9 ------------------------- NEW FEATURES BUG FIXES * A new calculation of the stats for the proteins is available in DAPAR (1.4.6) CHANGES IN VERSION 1.4.8 ------------------------- NEW FEATURES * the heigth of the sidebar panel for the choice of demo dataset has been extended BUG FIXES * An error was catched in the differnetial analysis, step 3 if no data is selected, to avoid an error when Prostar computes the FDR * During the calibration plot (Differential Analysis), if the user chooses a numeric value for Pi0, then th validation of the differential analysis has an error. This bug has been fixed. CHANGES IN VERSION 1.4.7 ------------------------- NEW FEATURES BUG FIXES * Add a dependancy to the DAPARdata package to avoid error at the installation. CHANGES IN VERSION 1.4.6 ------------------------- NEW FEATURES BUG FIXES * A bug related to the filtering of missing values has been fixed. CHANGES IN VERSION 1.4.5 ------------------------- NEW FEATURES BUG FIXES * A bug related to the filtering of contaminants and Reverse. When the user write a prefix int the text field and no lines correspond to the specified prefix, then the entire dataset was deleted. This bug has been fixed * When the user save the dataset after the imputation step, the old versions of datasets are erased. This bug has also been fixed. CHANGES IN VERSION 1.4.1 ------------------------- NEW FEATURES BUG FIXES * The user interface has been debugged so as to avoid the hang of the server in the missing values imputation tool and differential analysis tool. CHANGES IN VERSION 1.3.18 ------------------------- NEW FEATURES BUG FIXES * The aggregation tool has been debugged and now, the way the user perform the aggregation is similar to the other processing tools. When the user is working on a protein dataset, the aggregation options are disabled. CHANGES IN VERSION 1.3.10 ------------------------- NEW FEATURES BUG FIXES * Bug fixed when saving the dataset after the differential analysis CHANGES IN VERSION 1.3.8 ------------------------- NEW FEATURES BUG FIXES * Minor bugs fixed CHANGES IN VERSION 1.3.6 ------------------------- NEW FEATURES * This is a major update of the GUI which is based on Navbar menus. This new GUI gives a larger place to plots and options. BUG FIXES CHANGES IN VERSION 1.3.3 ------------------------- NEW FEATURES * New interface for the differential analysis which include calibration plots from the cp4p package. BUG FIXES CHANGES IN VERSION 1.1.3 ------------------------- NEW FEATURES * Add contaminant and Reverse filters BUG FIXES CHANGES IN VERSION 1.1.1 ------------------------- NEW FEATURES * Updates to be compliant with DAPAR >=1.1.1 BUG FIXES CHANGES IN VERSION 0.99.0 ------------------------- NEW FEATURES * First submission of Prostar to Bioconductor