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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")
In most cases, you don't need to download the package archive at all.
shinyTANDEM
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see shinyTANDEM.
Provides a GUI for rTANDEM
Bioconductor version: 3.4
This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.
Author: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Maintainer: Frederic Fournier <frederic.fournier at crchuq.ulaval.ca>
Citation (from within R,
enter citation("shinyTANDEM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyTANDEM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyTANDEM")
| shinyTANDEM user guide | ||
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (3.5 years) |
| License | GPL-3 |
| Depends | rTANDEM(>= 1.3.5), shiny, mixtools, methods, xtable |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | shinyTANDEM_1.12.0.tar.gz |
| Windows Binary | shinyTANDEM_1.12.0.zip |
| Mac OS X 10.9 (Mavericks) | shinyTANDEM_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/shinyTANDEM/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/shinyTANDEM/ |
| Package Downloads Report | Download Stats |
Documentation »
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