To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("h5vc")

In most cases, you don't need to download the package archive at all.

h5vc

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see h5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: 3.4

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, enter citation("h5vc")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("h5vc")

HTML	R Script	Building a minimal genome browser with h5vc and shiny
HTML	R Script	h5vc -- Tour
PDF		Reference Manual

biocViews	Software
Version	2.8.1
In Bioconductor since	BioC 2.13 (R-3.0) (3.5 years)
License	GPL (>= 3)
Depends	grid, gridExtra, ggplot2
Imports	rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 1.19.38), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb
LinkingTo	Rsamtools
Suggests	knitr, locfit, BSgenome.Hsapiens.UCSC.hg19, bit64, biomaRt, BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	h5vcData
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	h5vc_2.8.1.tar.gz
Windows Binary	h5vc_2.8.1.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	h5vc_2.8.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/h5vc/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/h5vc/
Package Downloads Report	Download Stats

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