- Home
- Bioconductor 3.4
- Software Packages
- gtrellis
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gtrellis")
In most cases, you don't need to download the package archive at all.
gtrellis
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see gtrellis.
Genome Level Trellis Layout
Bioconductor version: 3.4
Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("gtrellis")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gtrellis")
Documentation
| HTML | R Script | Make Genome-level Trellis Graph |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), grid, IRanges, GenomicRanges |
| Imports | circlize (>= 0.3.3), GetoptLong |
| LinkingTo | |
| Suggests | testthat (>= 1.0.0), knitr, RColorBrewer, markdown, ComplexHeatmap(>= 1.9.7) |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/gtrellis |
| Depends On Me | |
| Imports Me | YAPSA |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | gtrellis_1.6.0.tar.gz |
| Windows Binary | gtrellis_1.6.0.zip |
| Mac OS X 10.9 (Mavericks) | gtrellis_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/gtrellis/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/gtrellis/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
