To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ffpe")

In most cases, you don't need to download the package archive at all.

ffpe

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ffpe.

Quality assessment and control for FFPE microarray expression data

Bioconductor version: 3.4

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <levi.waldron at hunter.cuny.edu>

Citation (from within R, enter citation("ffpe")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ffpe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ffpe")

 

PDF R Script ffpe package user guide
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, QualityControl, Software
Version 1.18.0
In Bioconductor since BioC 2.10 (R-2.15) (5 years)
License GPL (>2)
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
LinkingTo
Suggests genefilter, ffpeExampleData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ffpe_1.18.0.tar.gz
Windows Binary ffpe_1.18.0.zip
Mac OS X 10.9 (Mavericks) ffpe_1.18.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ffpe/tree/release-3.4
Package Short Url http://bioconductor.org/packages/ffpe/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: