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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("crisprseekplus")
In most cases, you don't need to download the package archive at all.
crisprseekplus
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see crisprseekplus.
crisprseekplus
Bioconductor version: 3.4
Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.
Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>
Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>
Citation (from within R,
enter citation("crisprseekplus")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("crisprseekplus")
Documentation
| HTML | R Script | DEBrowser Vignette |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GeneRegulation, SequenceMatching, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0), shiny, shinyjs, CRISPRseek |
| Imports | DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocInstaller, BSgenome, AnnotationDbi, hash |
| LinkingTo | |
| Suggests | testthat, rmarkdown, knitr, R.rsp |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/UMMS-Biocore/crisprseekplus |
| BugReports | https://github.com/UMMS-Biocore/crisprseekplus/issues/new |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | crisprseekplus_1.0.0.tar.gz |
| Windows Binary | crisprseekplus_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | crisprseekplus_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/crisprseekplus/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/crisprseekplus/ |
| Package Downloads Report | Download Stats |
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