To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rmagpie")

In most cases, you don't need to download the package archive at all.

Rmagpie

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see Rmagpie.

MicroArray Gene-expression-based Program In Error rate estimation

Bioconductor version: 3.4

Microarray Classification is designed for both biologists and statisticians. It offers the ability to train a classifier on a labelled microarray dataset and to then use that classifier to predict the class of new observations. A range of modern classifiers are available, including support vector machines (SVMs), nearest shrunken centroids (NSCs)... Advanced methods are provided to estimate the predictive error rate and to report the subset of genes which appear essential in discriminating between classes.

Author: Camille Maumet <Rmagpie at gmail.com>, with contributions from C. Ambroise J. Zhu

Maintainer: Camille Maumet <Rmagpie at gmail.com>

Citation (from within R, enter citation("Rmagpie")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rmagpie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rmagpie")

PDF	R Script	Rmagpie Examples
PDF		Reference Manual

Details

biocViews	Classification, Microarray, Software
Version	1.30.0
In Bioconductor since	BioC 2.4 (R-2.9) (8 years)
License	GPL (>= 3)
Depends	R (>= 2.6.1), Biobase(>= 2.5.5)
Imports	Biobase(>= 2.5.5), e1071, graphics, grDevices, kernlab, methods, pamr, stats, utils
LinkingTo
Suggests	xtable
SystemRequirements
Enhances
URL	http://www.bioconductor.org/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rmagpie_1.30.0.tar.gz
Windows Binary	Rmagpie_1.30.0.zip
Mac OS X 10.9 (Mavericks)	Rmagpie_1.30.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/Rmagpie/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/Rmagpie/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

Package vignettes and manuals.
Workflows for learning and use.
Course and conference material.
Videos.
Community resources and tutorials.

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Support site - for questions about Bioconductor packages
Bioc-devel mailing list - for package developers