To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RedeR")
In most cases, you don't need to download the package archive at all.
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see RedeR.
Bioconductor version: 3.4
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("RedeR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RedeR")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
R Script | Main vignette: interactive visualization and manipulation of nested networks | |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
Version | 1.22.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (5.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.15), methods, igraph |
Imports | RCurl, XML, pvclust |
LinkingTo | |
Suggests | PANR |
SystemRequirements | Java Runtime Environment (>= 6) |
Enhances | |
URL | http://genomebiology.com/2012/13/4/R29 |
Depends On Me | Fletcher2013b, SRGnet |
Imports Me | Mulder2012, PANR, RTN |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | RedeR_1.22.0.tar.gz |
Windows Binary | RedeR_1.22.0.zip |
Mac OS X 10.9 (Mavericks) | RedeR_1.22.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/RedeR/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |
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