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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGeneInteR")
In most cases, you don't need to download the package archive at all.
GeneGeneInteR
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see GeneGeneInteR.
Tools for Testing Gene-Gene Interaction at the Gene Level
Bioconductor version: 3.4
The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.
Author: Mathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houee-Bigot
Maintainer: Mathieu Emily <mathieu.emily at agrocampus-ouest.fr>, Magalie Houee-Bigot <magalie.houee at agrocampus-ouest.fr>
Citation (from within R,
enter citation("GeneGeneInteR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGeneInteR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneGeneInteR")
| R Script | GeneGeneInteR Introduction | |
| R Script | Pairwise interaction tests | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneticVariability, Genetics, GenomeWideAssociation, SNP, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3) |
| Imports | snpStats, mvtnorm, GGtools, Rsamtools, igraph, kernlab, FactoMineR, plspm, IRanges, GenomicRanges, data.table, rioja, grDevices, graphics, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GeneGeneInteR_1.0.0.tar.gz |
| Windows Binary | GeneGeneInteR_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | GeneGeneInteR_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GeneGeneInteR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/GeneGeneInteR/ |
| Package Downloads Report | Download Stats |
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