To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GRENITS")
In most cases, you don't need to download the package archive at all.
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see GRENITS.
Bioconductor version: 3.4
The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.
Author: Edward Morrissey
Maintainer: Edward Morrissey <edward.morrissey at gmail.com>
Citation (from within R,
enter citation("GRENITS")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GRENITS")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GRENITS")
R Script | GRENITS | |
Reference Manual | ||
Text | NEWS |
biocViews | Bayesian, GeneExpression, GeneRegulation, GraphAndNetwork, Network, NetworkInference, Software, TimeCourse |
Version | 1.26.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (5.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0) |
Imports | graphics, grDevices, reshape2, stats, utils |
LinkingTo | Rcpp, RcppArmadillo |
Suggests | network |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | GRENITS_1.26.0.tar.gz |
Windows Binary | GRENITS_1.26.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | GRENITS_1.26.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/GRENITS/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/GRENITS/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: