To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeepBlueR")

In most cases, you don't need to download the package archive at all.

DeepBlueR

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see DeepBlueR.

Bioconductor version: 3.4

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at mpi-inf.mpg.de>

Citation (from within R, enter citation("DeepBlueR")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeepBlueR")

HTML	R Script	The DeepBlue epigenomic data server - R package
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, Preprocessing, Software, ThirdPartyClient
Version	1.0.11
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	GPL (>=2.0)
Depends	R (>= 3.3), XML, RCurl
Imports	GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
LinkingTo
Suggests	knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	DeepBlueR_1.0.11.tar.gz
Windows Binary	DeepBlueR_1.0.11.zip
Mac OS X 10.9 (Mavericks)	DeepBlueR_1.0.11.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DeepBlueR/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/DeepBlueR/
Package Downloads Report	Download Stats

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