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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHnormaliter")
In most cases, you don't need to download the package archive at all.
CGHnormaliter
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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see CGHnormaliter.
Normalization of array CGH data with imbalanced aberrations.
Bioconductor version: 3.4
Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling
Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>
Citation (from within R,
enter citation("CGHnormaliter")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHnormaliter")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGHnormaliter")
| R Script | CGHnormaliter | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (7.5 years) |
| License | GPL (>= 3) |
| Depends | CGHcall(>= 2.17.0), CGHbase(>= 1.15.0) |
| Imports | Biobase, CGHbase, CGHcall, methods, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CGHnormaliter_1.28.0.tar.gz |
| Windows Binary | CGHnormaliter_1.28.0.zip |
| Mac OS X 10.9 (Mavericks) | CGHnormaliter_1.28.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CGHnormaliter/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/CGHnormaliter/ |
| Package Downloads Report | Download Stats |
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