To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BayesKnockdown")

In most cases, you don't need to download the package archive at all.

BayesKnockdown

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see BayesKnockdown.

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Bioconductor version: 3.4

A simple, fast Bayesian method for computing posterior probabilities for relationships between a single predictor variable and multiple potential outcome variables, incorporating prior probabilities of relationships. In the context of knockdown experiments, the predictor variable is the knocked-down gene, while the other genes are potential targets. Can also be used for differential expression/2-class data.

Author: William Chad Young

Maintainer: William Chad Young <wmchad at uw.edu>

Citation (from within R, enter citation("BayesKnockdown")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BayesKnockdown")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BayesKnockdown")

 

PDF R Script BayesKnockdown.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, GeneExpression, GeneTarget, Network, NetworkInference, Software
Version 1.0.0
In Bioconductor since BioC 3.4 (R-3.3) (0.5 years)
License GPL-3
Depends R (>= 3.3)
Imports stats, Biobase
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BayesKnockdown_1.0.0.tar.gz
Windows Binary BayesKnockdown_1.0.0.zip
Mac OS X 10.9 (Mavericks) BayesKnockdown_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BayesKnockdown/tree/release-3.4
Package Short Url http://bioconductor.org/packages/BayesKnockdown/
Package Downloads Report Download Stats

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