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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BBCAnalyzer")
In most cases, you don't need to download the package archive at all.
BBCAnalyzer
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see BBCAnalyzer.
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Bioconductor version: 3.4
BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.
Author: Sarah Sandmann
Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>
Citation (from within R,
enter citation("BBCAnalyzer")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BBCAnalyzer")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BBCAnalyzer")
| R Script | Using BBCAnalyzer | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, Coverage, GeneticVariability, SNP, Sequencing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | LGPL-3 |
| Depends | |
| Imports | SummarizedExperiment, VariantAnnotation, Rsamtools, grDevices, GenomicRanges, IRanges, Biostrings |
| LinkingTo | |
| Suggests | BSgenome.Hsapiens.UCSC.hg19 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BBCAnalyzer_1.4.0.tar.gz |
| Windows Binary | BBCAnalyzer_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | BBCAnalyzer_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BBCAnalyzer/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/BBCAnalyzer/ |
| Package Downloads Report | Download Stats |
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