aptamers |
Sequence data for the Somalogic SOMAscan assay |
as.ExpressionSet |
Convert objects into ExpressionSets or MSnSets. |
as.ExpressionSet.WideSomaLogicData |
Convert objects into ExpressionSets or MSnSets. |
as.matrix.WideSomaLogicData |
Get WideSomaLogicData attributes |
as.MSnSet |
Convert objects into ExpressionSets or MSnSets. |
as.MSnSet.WideSomaLogicData |
Convert objects into ExpressionSets or MSnSets. |
as.SummarizedExperiment |
Convert objects into SummarizedExperiments |
as.SummarizedExperiment.WideSomaLogicData |
Convert objects into SummarizedExperiments |
chromosomalPositions |
Chromosomal Positions by SomaLogic AptamerId |
colnamesStartWithSeqId |
Does the input contain Sequence ID column names? |
convertSeqIdToAptamer |
Convert SeqIds to Aptamers |
createSampleSubmission |
Create a SomaLogic Sample Submission Form |
defunct |
Defunct objects in readat |
ensemblIds |
Ensembl IDs by SomaLogic AptamerId |
extractSampleData |
Extract the sample datasets |
getChecksum |
Get WideSomaLogicData attributes |
getChromosomalPositions |
Get Chromosomal Positions by AptamerId |
getEnsemblIds |
Get Ensembl IDs by AptamerId |
getGoBiologicalProcesses |
GO definitions by AptamerId |
getGoCellularComponents |
GO definitions by AptamerId |
getGoMolecularFunctions |
GO definitions by AptamerId |
getIntensities |
Get WideSomaLogicData attributes |
getIntensities.LongSomaLogicData |
Get WideSomaLogicData attributes |
getIntensities.WideSomaLogicData |
Get WideSomaLogicData attributes |
getKeggDefinitions |
KEGG definitions, modules, and pathways by AptamerId |
getKeggModules |
KEGG definitions, modules, and pathways by AptamerId |
getKeggPathways |
KEGG definitions, modules, and pathways by AptamerId |
getMetadata |
Get WideSomaLogicData attributes |
getPfam |
Get PFAM IDs by AptamerId |
getSampleData |
Get WideSomaLogicData attributes |
getSampleData.LongSomaLogicData |
Get WideSomaLogicData attributes |
getSampleData.WideSomaLogicData |
Get WideSomaLogicData attributes |
getSequenceData |
Get WideSomaLogicData attributes |
getSequencesWithLargestBetweenGroupVariation |
Get sequences with the largest between group variation |
getUniProtKeywords |
Get UniProt Keywords by AptamerId |
goBiologicalProcess |
GO definitions by SomaLogic AptamerId |
goCellularComponent |
GO definitions by SomaLogic AptamerId |
goMolecularFunction |
GO definitions by SomaLogic AptamerId |
isPass |
Is the value a pass |
keggDefinitions |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
keggDefinitions1129 |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
keggModules |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
keggModules1129 |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
keggPathways |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
keggPathways1129 |
KEGG definitions, modules, and pathways by SomaLogic AptamerId |
melt.WideSomaLogicData |
Melt a WideSomaLogicData object |
pfam |
PFAM IDs by SomaLogic AptamerId |
readAdat |
Read a SomaLogic data file |
readat-defunct |
Defunct objects in readat |
readComments |
Read SomaLogic Sample Submission Comments File |
readControls |
Read SomaLogic Sample Submission Controls File |
readFirstChar |
Read the first character of each line |
readSamples |
Read SomaLogic Sample Submission Samples File |
readSlides |
Read SomaLogic Sample Submission Slides File |
setChecksum |
Get WideSomaLogicData attributes |
setIntensities |
Get WideSomaLogicData attributes |
setMetadata |
Get WideSomaLogicData attributes |
setSampleData |
Get WideSomaLogicData attributes |
setSequenceData |
Get WideSomaLogicData attributes |
soma2eset |
Convert objects into ExpressionSets or MSnSets. |
uniprotKeywords |
UniProt Keywords by SomaLogic AptamerId |
WideSomaLogicData |
Create a WideSomaLogicData object |
WideSomaLogicDataAttributes |
Get WideSomaLogicData attributes |
writeSampleSubmissionForm |
Write a SomaLogic sample submission form |
[.WideSomaLogicData |
Indexing for WideSomaLogicData objects |