annotate_balance | annotate_balance |
build.phylo.ilr | Data transformation and driver of PhILR. |
buildilrBasep | Weighted ILR Contrast Matrix |
calc.blw | Calculate Branch Length Weightings for ILR Coordinates |
calculate.blw | Calculate Branch Length Weightings for ILR Coordinates |
clrp | Weighted CLR Transform |
convert_to_long | Converts wide format ILR transformed data to long format |
g.colMeans | Geometric Means of Columns |
g.rowMeans | Weighted Geometric Means of Rows |
ilrp | Weighted ILR Transform |
mean_dist_to_tips | Mean distance from internal nodes to descendant tips |
miniclo | miniclo |
name.balance | Name a balance (coordinate) based on taxonomy |
name.to.nn | Convert between node/tip labels and integer node numbers |
named_rtree | Generate random tree with named internal nodes |
name_nodenumber_conversion | Convert between node/tip labels and integer node numbers |
nn.to.name | Convert between node/tip labels and integer node numbers |
philr | Data transformation and driver of PhILR. |
phylo2sbp | Create Sequential Binary Partition from Phylogenetic Tree |
shiftp | Shift data to origin given by p |