bioCancer-package | Launch bioCancer with default browser |
attriColorGene | Attribute Color to Gene |
attriColorValue | Attribute Color to Value |
attriColorVector | Attribute color to a vector of numeric values |
attriShape2Gene | Attribute shape to nodes |
attriShape2Node | Attributes shape to Nodes |
bioCancer | Launch bioCancer with default browser |
checkDimensions | Chech wich Cases and genetic profiles are available for every seleted study |
coffeewheel | This is an htmlwidgets-based visualization tool for hierarchical data. It is zoomable, meaning that you can interact with the hierarchy and zoom in/out accordingly. |
coffeewheelOutput | Widget output function for use in Shiny |
displayTable | Display dataframe in table using DT package |
Edges_Diseases_obj | get Edges dataframe for Gene/Disease association from geNetClassifier |
getFreqMutData | get mutation frequency |
getListProfData | get list of data frame with profiles data (CNA,mRNA, Methylation, Mutation...) |
grepRef | search and get genetic profiles (CNA,mRNA, Methylation, Mutation...) |
metabologram | Circular plot of hierarchital data of genetic profile. |
Mutation_obj | Atribute mutation frequency to nodes |
Node_df_FreqIn | Attributes size to Nodes depending on number of interaction |
Node_Diseases_obj | Attributes color and shape to Nodes of Diseases |
Node_obj_CNA_ProfData | Attribute CNA data to node border |
Node_obj_FreqIn | Attribute interaction frequency to node size |
Node_obj_Met_ProfData | Attribute gene Methylation to Nodes |
Node_obj_mRNA_Classifier | Atrribute genes expression to color nodes |
renderCoffeewheel | Widget render function for use in Shiny |
reStrColorGene | Restructure the list of color attributed to the genes in every dimenssion for every studies |
reStrDimension | Restructure the list of color attributed to the genes in every study for every dimensions |
reStrDisease | Restructure the list of color attributed to the genes in every disease |
sampleWheelData | Sample data for wheel initialization |
Studies_obj | get object for grViz. Link Studies to genes |
UnifyRowNames | Unify row names in data frame with the same order of gene list. |
whichGeneList | Verify which gene list is selected |