An integrated analysis package of miRNA and mRNA expression data


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Documentation for package ‘anamiR’ version 1.0.1

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anamiR-package anamiR: An integrated analysis package of miRNA and mRNA expression data.
anamiR anamiR: An integrated analysis package of miRNA and mRNA expression data.
database_support Intersect with databases for potential miRNA-target gene interactions
differExp_continuous Find differential expression genes or miRNAs from given expression data
differExp_discrete Find differential expression genes or miRNAs from given expression data
enrichment Enrich pathway with genes from potential miRNA-target gene interactions.
heat_vis Using correlation information to draw a heatmaps
mirna miRNA expression data about breast cancer
miR_converter Convert miRNA annotation to the miRBase 21 version
mrna mRNA expression data about breast cancer
multi_Differ Find differential expression groups of each genes or miRNA from expression data
negative_cor Find the correlation coefficient between each gene and miRNA.
normalization Normalize expression data
pheno.mirna phenotype data of 'mirna' about breast cancer
pheno.mrna phenotype data of 'mrna' about breast cancer