Differential Expression Analysis of NanoString nCounter Data


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Documentation for package ‘NanoStringDiff’ version 1.4.0

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NanoStringDiff-package NanoStringDiff package for differential expression analysis of NanoString nCounter data
createNanoStringSet NanoStringSet object and constructors
createNanoStringSetFromCsv NanoStringSet object and constructors
estNormalizationFactors estimate normalization factors,include positive size factors, background noise, housekeeping size factors.
estNormalizationFactors-method estimate normalization factors,include positive size factors, background noise, housekeeping size factors.
glm.LRT perform gene-wise likelihood ratio test for NanoString Data
glm.LRT-method perform gene-wise likelihood ratio test for NanoString Data
housekeepingControl Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl-method Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl<- Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingControl<--method Acessor functions for the 'housekeepingControl' slot in a NanoStringSet object.
housekeepingFactor Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor-method Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor<- Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
housekeepingFactor<--method Acessor functions for the 'housekeepingFactor' slot in a NanoStringSet object.
NanoStringData A real 'NanoStringSet' object.
NanoStringDiff NanoStringDiff package for differential expression analysis of NanoString nCounter data
NanoStringSet NanoStringSet object and constructors
NanoStringSet-class NanoStringSet object and constructors
negativeControl Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl-method Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl<- Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeControl<--method Acessor functions for the 'negativeControl' slot in a NanoStringSet object.
negativeFactor Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor-method Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor<- Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
negativeFactor<--method Acessor functions for the 'negativeFactor' slot in a NanoStringSet object.
positiveControl Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl-method Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl<- Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveControl<--method Acessor functions for the 'positiveControl' slot in a NanoStringSet object.
positiveFactor Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor-method Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor<- Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.
positiveFactor<--method Acessor functions for the 'positiveFactor' slot in a NanoStringSet object.