MultiAssayExperiment-package | MultiAssayExperiment: Build an integrative multi-assay container |
$-method | An integrative MultiAssay class for experiment data |
$<--method | An integrative MultiAssay class for experiment data |
.ExperimentList | A container for multi-experiment data |
.RangedRaggedAssay | An extension of the GRangesList class |
API | Refer to the API documentation |
assay-method | A container for multi-experiment data |
assay-method | An integrative MultiAssay class for experiment data |
assay-method | Create a Matrix of score values using a GRanges or own ranges |
complete.cases-method | An integrative MultiAssay class for experiment data |
dim-method | An extension of the GRangesList class |
dimnames-method | A container for multi-experiment data |
dimnames-method | An integrative MultiAssay class for experiment data |
dimnames-method | An extension of the GRangesList class |
dimnames<--method | An extension of the GRangesList class |
ExperimentList | experiment Acessor function for the 'ExperimentList' slot of a 'MultiAssayExperiment' object |
ExperimentList-class | A container for multi-experiment data |
ExperimentList-method | A container for multi-experiment data |
experiments | Accessor function for the 'ExperimentList' slot of a 'MultiAssayExperiment' object |
experiments-method | An integrative MultiAssay class for experiment data |
experiments<- | Replace an 'ExperimentList' slot value with a given 'ExperimentList' class object |
experiments<--method | An integrative MultiAssay class for experiment data |
getHits | Find hits by class type |
getHits-method | An extension of the GRangesList class |
getHits-method | Find hits by class type |
hasAssay | Checking assay method for any class |
isEmpty-method | An integrative MultiAssay class for experiment data |
length-method | An integrative MultiAssay class for experiment data |
listToMap | Convert map from data.frame or DataFrame to list and vice versa |
mapToList | Convert map from data.frame or DataFrame to list and vice versa |
metadata-method | An integrative MultiAssay class for experiment data |
metadata<--method | An integrative MultiAssay class for experiment data |
MultiAssayExperiment | MultiAssayExperiment: Build an integrative multi-assay container |
MultiAssayExperiment-class | An integrative MultiAssay class for experiment data |
names-method | An integrative MultiAssay class for experiment data |
ncol-method | An extension of the GRangesList class |
nrow-method | An extension of the GRangesList class |
pData-method | An integrative MultiAssay class for experiment data |
pData<--method | An integrative MultiAssay class for experiment data |
PrepMultiAssay | Prepare a 'MultiAssayExperiment' instance |
RangedRaggedAssay | Create a RangedRaggedAssay |
RangedRaggedAssay-class | An extension of the GRangesList class |
sampleMap | Accessor function for the 'sampleMap' slot of a 'MultiAssayExperiment' object |
sampleMap-method | An integrative MultiAssay class for experiment data |
sampleMap<- | Replace a slot value with a given 'DataFrame' |
sampleMap<--method | An integrative MultiAssay class for experiment data |
show-method | A container for multi-experiment data |
show-method | An integrative MultiAssay class for experiment data |
show-method | An extension of the GRangesList class |
subsetByAssay | Subset 'MultiAssayExperiment' object by Assay type |
subsetByAssay-method | Subset 'MultiAssayExperiment' object by Assay type |
subsetByColumn | Subset 'MultiAssayExperiment' object |
subsetByColumn-method | Subset 'MultiAssayExperiment' object |
subsetByRow | Subset 'MultiAssayExperiment' object by Feature |
subsetByRow-method | Subset 'MultiAssayExperiment' object by Feature |
updateObject-method | An integrative MultiAssay class for experiment data |
[-method | An integrative MultiAssay class for experiment data |
[-method | An extension of the GRangesList class |