directionality_reactions | List of KEGG reactions with incorrect/inconsistent directionality |
hpaNormalTissue | Expression profiles for proteins in human tissues |
MetaboSignal_distances | Calculate gene-metabolite distance matrix |
MetaboSignal_matrix | Build MetaboSignal network-table |
MetaboSignal_NetworkCytoscape | Build shortest-path subnetwork |
MetaboSignal_table | Example of MetaboSignal network-table filtered by tissue expression |
MetaboSignal_tableUnfiltered | Example of MetaboSignal network-table unfiltered by tissue expression |
MS_ChangeNames | Transform KEGG IDs into common names |
MS_FilterNetwork | Filter network based on distances or betweenness |
MS_FindKEGG | Get KEGG IDs for compounds, organisms or pathways |
MS_FindMappedNodes | Map gene IDs or metabolite IDs onto the network |
MS_GetKEGG_GeneID | Transform entrez IDs or gene symbols into KEGG IDs |
MS_GetShortestpaths | Calculate shortest paths |
MS_NodeBW | Get distribution of node betweeness |
MS_RemoveNode | Remove undesired nodes from the network |
MS_ReplaceNode | Replace nodes of the network |
MS_ToCytoscape | Export network in cytoscape format |
neglected_genes | Genes removed during tissue-expression filtering |
subnetwork | Shortest-path subnetwork |