adduct |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct_rank |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct_rank-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct_rank<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
adduct_rank<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
default.acylRanges |
LOBSTAHS default databases and database generation parameters |
default.adductHierarchies |
LOBSTAHS default databases and database generation parameters |
default.componentCompTable |
LOBSTAHS default databases and database generation parameters |
default.LOBdbase |
LOBSTAHS default databases and database generation parameters |
default.oxyRanges |
LOBSTAHS default databases and database generation parameters |
default.rt.windows |
LOBSTAHS default databases and database generation parameters |
degree_oxidation |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
degree_oxidation-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
degree_oxidation<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
degree_oxidation<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
doLOBscreen |
Screen, annotate, and identify compounds in an xsAnnotate object |
exact_parent_neutral_mass |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
exact_parent_neutral_mass-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
exact_parent_neutral_mass<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
exact_parent_neutral_mass<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
extractLOBdbasedata |
Extract compound data from a LOBdbase |
FA_total_no_C |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_C-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_C<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_C<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_DB |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_DB-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_DB<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
FA_total_no_DB<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
frag_ID |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
frag_ID-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
frag_ID<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
frag_ID<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
generateLOBdbase |
Conduct _in silico_ simulation and generate lipid-oxylipin database |
getLOBpeaklist |
Export screened LOBSTAHS peaklist with compound assignments |
lipid_class |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
lipid_class-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
lipid_class<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
lipid_class<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
loadLOBdbase |
Import and reconstruct LOBdbase from a text file |
LOBdbase |
LOBdbase constructor for manual creation or reconstruction of a LOBdbase object |
LOBdbase-class |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
LOBdefaults |
LOBSTAHS default databases and database generation parameters |
LOBisoID_diagnostics |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBisoID_diagnostics-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBisoID_diagnostics<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBisoID_diagnostics<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_diagnostics |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_diagnostics-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_diagnostics<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_diagnostics<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_settings |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_settings-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_settings<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBscreen_settings<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
LOBSet |
LOBSet constructor for manual creation or reconstruction of a LOBSet object |
LOBSet-class |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
mz |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
mz-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
mz<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
mz<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_compounds |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_compounds-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_compounds<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_compounds<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_entries |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_entries-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_entries<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
num_entries<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_compound_name |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_compound_name-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_compound_name<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_compound_name<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_elem_formula |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_elem_formula-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_elem_formula<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
parent_elem_formula<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
peakdata |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
peakdata-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
peakdata<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
peakdata<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
polarity |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
polarity-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
polarity-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
polarity<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
polarity<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
polarity<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
sampnames |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
sampnames-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
sampnames<- |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
sampnames<--method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
show-method |
Class LOBSet: Peak data with annotations, isomers, and compound assignments |
show-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
species |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
species-method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
species<- |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |
species<--method |
Class LOBdbase: A class for LOBSTAHS lipid-oxylipin databases |