HCsnip-package |
Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree |
BullingerLeukemia |
Leukemia data |
cluster_pred |
Semi-supervised clustering |
EnvioPlot |
Visualize cluster's molecular entropy by violin plot |
HCsnipper |
HC tree snipper |
measure |
Evaluate cluster quality |
perm_test |
A function to select an optimal partition (clustering) from large number of candidates and calculate the _p_-value for it. |
RSF_eval |
Function to calculate error rate using the Random Survival Forest |
surv_measure |
Cluster quality evaluation using follow-up data |
TcgaGBM |
Glioblastoma multiforme gene expression data |
TwoHC_assign |
Function to assign new samples to one of the two given hierarchical clustering trees in a semi-supervised way |
TwoHC_perm |
Function to assess the significance of group assignmetn from 'TwoHC_assign' |