calcThreshold | Calculate Read Count Threshold |
calcThreshold-method | Calculate Read Count Threshold |
countReads | Count reads from a 'BamFile' |
countReads-method | Count reads from a 'BamFile' |
export-method | '"GreyList"' Objects |
getKaryotype | Replace the karyotype of a 'GreyList' object |
getKaryotype-method | Replace the karyotype of a 'GreyList' object |
gl | A sample 'GreyList' object for use in examples. |
GreyList | '"GreyList"' Objects |
greyList | A sample 'GreyList' object for use in examples. |
GreyList-class | '"GreyList"' Objects |
greyListBS | Construct a grey list with default arguments |
initialize-method | '"GreyList"' Objects |
loadKaryotype | Load a karyotype from a file |
loadKaryotype-method | Load a karyotype from a file |
makeGreyList | Generate a grey list from a 'GreyList' object |
makeGreyList-method | Generate a grey list from a 'GreyList' object |
show-method | '"GreyList"' Objects |