Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm


[Up] [Top]

Documentation for package ‘GeneGA’ version 1.24.0

Help Pages

GeneGA-package Designing gene based on mRNA secondary structure and codon usage bias using Genetic algorithm, GeneGA includes the information of highly expressed genes of almost 200 genomes.
GeneCodon Optimizing the codon usage of gene by replacing less usage codons with the most preference used codons or replacing the most preference used codons with less usage codons.
GeneFoldGA the function optimizes gene merely considering mRNA secondary structure.
GeneFoldGA-class Class "GeneFoldGA"
GeneGA the function optimizes gene expression based on both mRNA secondary structure and codon usage bias
GeneGA-class Class "GeneGA"
plotGeneGA plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA-method plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA-methods plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA.GeneFoldGA plotGeneGA methods of GeneGA and GeneFoldGA objects
plotGeneGA.GeneGA plotGeneGA methods of GeneGA and GeneFoldGA objects
show-method Class "GeneFoldGA"
show-method Class "GeneGA"
wSet Codon Adaptation Index (CAI) w tables