GeneGA-package |
Designing gene based on mRNA secondary structure and codon usage bias using Genetic algorithm, GeneGA includes the information of highly expressed genes of almost 200 genomes. |
GeneCodon |
Optimizing the codon usage of gene by replacing less usage codons with the most preference used codons or replacing the most preference used codons with less usage codons. |
GeneFoldGA |
the function optimizes gene merely considering mRNA secondary structure. |
GeneFoldGA-class |
Class "GeneFoldGA" |
GeneGA |
the function optimizes gene expression based on both mRNA secondary structure and codon usage bias |
GeneGA-class |
Class "GeneGA" |
plotGeneGA |
plotGeneGA methods of GeneGA and GeneFoldGA objects |
plotGeneGA-method |
plotGeneGA methods of GeneGA and GeneFoldGA objects |
plotGeneGA-methods |
plotGeneGA methods of GeneGA and GeneFoldGA objects |
plotGeneGA.GeneFoldGA |
plotGeneGA methods of GeneGA and GeneFoldGA objects |
plotGeneGA.GeneGA |
plotGeneGA methods of GeneGA and GeneFoldGA objects |
show-method |
Class "GeneFoldGA" |
show-method |
Class "GeneGA" |
wSet |
Codon Adaptation Index (CAI) w tables |