Methylation array and sequencing spatial analysis methods


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Documentation for package ‘DMRcate’ version 1.10.10

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DMRcate-package DMR calling from bisulphite sequencing and Illumina array data
cpg.annotate Annotate CpGs with their chromosome position and test statistic
DMR.plot Plotting DMRs
DMRcate DMR calling from bisulphite sequencing and Illumina array data
dmrcate DMR identification
extractRanges Create GRanges object from 'dmrcate' output.
plot Plotting DMRs
rmSNPandCH Filter probes