AbundanceGoM | GoM model fit for abundance data |
BatchCorrectedCounts | Obtain Batch effect Corrected counts |
cg_topics | Compute the center of gravity of the clusters |
compare_omega | Re-ordering cluster membership proportion matrices and Information calculation |
ex.counts | counts data for GTEx V6 Brain data for 200 genes |
ExtractTopFeatures | Extracting top driving genes driving GoM clusters |
FitGoM | Grade of Membership (GoM) model fit ! |
GTExV6Brain.FitGoM | GoM model fit for GTEx V6 Brain bulk-RNA data |
handleNA | Deal with NAs in the dataset! |
MouseDeng2014.FitGoM | GoM model fit for Deng et al 2014 single cell RNA-seq data on mouse |
MouseJaitinSpleen.FitGoM | GoM model fit for Jaitin et al 2014 single cell RNA-seq data on mouse |
nullmodel_GoM | Null models for Grade of Membership (GoM) cluster validation |
RemoveSparseFeatures | Removes features with a lot of 0 counts |
StructureGGplot | Struture plot with ggplot2 package |