genes_WGCNA |
Top 5000 most variant genes in TCGA RNAseq data |
GS_lscore |
Lymphocyte score gene significance (GS) |
GS_pmet |
Primary vs metastasis gene significance (GS) |
GS_survival |
Survival gene significance (GS) |
GS_UV |
UV signature gene significance (GS) |
GS_Vem |
Vemurafenib resistance gene significance (GS) |
label_order |
Label order of co-expression modules |
METree_GO |
Gene tree of co-expression network |
MM |
Module membership |
modules |
Module assignment of top 5000 most variant genes in TCGA RNAseq data |
MS_lscore_bar |
Lymphocyte score module significance scaled for barplot |
MS_pmet_bar |
Primary vs metastasis module significance scaled for barplot |
MS_survival_bar |
Survival module significance scaled for barplot |
MS_UV_bar |
UV signature module significance scaled for barplot |
MS_Vem_bar |
Vemurafenib resistance module significance scaled for barplot |
oncotator_example |
Example Oncotator output for the case study described in the paper |
openCVE |
Open Cancer Variant Explorer (CVE) Shiny app |
WGCNAmelanoma_extension |
Melanoma co-expression network CVE extension |