Cancer Variant Explorer


[Up] [Top]

Documentation for package ‘CVE’ version 1.0.0

Help Pages

genes_WGCNA Top 5000 most variant genes in TCGA RNAseq data
GS_lscore Lymphocyte score gene significance (GS)
GS_pmet Primary vs metastasis gene significance (GS)
GS_survival Survival gene significance (GS)
GS_UV UV signature gene significance (GS)
GS_Vem Vemurafenib resistance gene significance (GS)
label_order Label order of co-expression modules
METree_GO Gene tree of co-expression network
MM Module membership
modules Module assignment of top 5000 most variant genes in TCGA RNAseq data
MS_lscore_bar Lymphocyte score module significance scaled for barplot
MS_pmet_bar Primary vs metastasis module significance scaled for barplot
MS_survival_bar Survival module significance scaled for barplot
MS_UV_bar UV signature module significance scaled for barplot
MS_Vem_bar Vemurafenib resistance module significance scaled for barplot
oncotator_example Example Oncotator output for the case study described in the paper
openCVE Open Cancer Variant Explorer (CVE) Shiny app
WGCNAmelanoma_extension Melanoma co-expression network CVE extension