CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data


[Up] [Top]

Documentation for package ‘COHCAP’ version 1.16.0

Help Pages

COHCAP.annotate Annotation for CpG Sites
COHCAP.avg.by.island CpG Island Differential Methylation Analysis (Average by Island Workflow).
COHCAP.avg.by.site CpG Island Differential Methylation Analysis (Average by Site Workflow).
COHCAP.BSSeq.preprocess Preprocessing for Targeted BS-Seq data
COHCAP.denovo De-Novo Identification of Differentially Methylated CpG Site Clusters
COHCAP.integrate.avg.by.island Integration with Gene Expression Data(Average by Island Workflow).
COHCAP.integrate.avg.by.site Integration with Gene Expression Data(Average by Site Workflow).
COHCAP.qc DNA Methylation Quality Control Statistics
COHCAP.site CpG Site Differential Methylation Analysis