Code for using BridgeDb identifier mapping framework from within R


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Documentation for package ‘BridgeDbR’ version 1.8.0

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BridgeDbR-package BridgeDBR Package.
BridgeDbR BridgeDBR Package.
getBridgeNames Method to list the BridgeDb identifier mapping file names as available from the download site.
getDatabase Downloads a identifier mapping database for the given organism.
getDataSource Return a DataSource object based on either a name or system code.
getFullName Return the name of a particular data source.
getMatchingSources Return a list of data sources of which the identifier pattern matches the identifier given.
getOrganismCode Return the code of a particular organism.
getSystemCode Return the system code of a particular data source.
loadDatabase Loads a BridgeDb identifier mapping database (.bridge file) as an IDMapper Java-Object.
map Converts one identifier into other identifiers for the given target data source.