To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
In most cases, you don't need to download the package archive at all.
spade
|
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see spade.
SPADE -- An analysis and visualization tool for Flow Cytometry
Bioconductor version: 3.3
SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.
Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson
Maintainer: Zach Bjornson <bjornson at stanford.edu>
Citation (from within R,
enter citation("spade")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spade")
| R Script | spade package | |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.11), igraph, Rclusterpp |
| Imports | Biobase, flowCore |
| LinkingTo | |
| Suggests | flowViz |
| SystemRequirements | |
| Enhances | |
| URL | http://cytospade.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | spade_1.20.0.tar.gz |
| Windows Binary | spade_1.20.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/spade/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/spade/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
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- Course and conference material.
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Support »
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