- Home
- Bioconductor 3.3
- Software Packages
- cellHTS
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS")
In most cases, you don't need to download the package archive at all.
cellHTS
|
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see cellHTS.
Analysis of cell-based screens
Bioconductor version: 3.3
Analysis of cell-based RNA interference screens.
Author: Wolfgang Huber <huber at ebi.ac.uk>, Ligia Bras <ligia at ebi.ac.uk>, Michael Boutros <m.boutros at dkfz.de>
Maintainer: Andrzej Oleś <andrzej.oles at embl.de>
Citation (from within R,
enter citation("cellHTS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellHTS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellHTS")
| R Script | Main vignette: End-to-end analysis of cell-based screens | |
| R Script | Supplement: multi-channel assays | |
| R Script | Supplement: two-way assays | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, Software, Visualization |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), grid |
| Imports | Biobase, prada, RColorBrewer, genefilter |
| LinkingTo | |
| Suggests | Category, ggplot2, GO.db, gridBase, vsn(>= 2.0.35) |
| SystemRequirements | |
| Enhances | |
| URL | http://www.dkfz.de/signaling http://www.ebi.ac.uk/huber |
| Depends On Me | |
| Imports Me | |
| Suggests Me | prada |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cellHTS_1.42.0.tar.gz |
| Windows Binary | cellHTS_1.42.0.zip |
| Mac OS X 10.9 (Mavericks) | cellHTS_1.42.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/cellHTS/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/cellHTS/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
