To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OCplus")
In most cases, you don't need to download the package archive at all.
OCplus
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see OCplus.
Operating characteristics plus sample size and local fdr for microarray experiments
Bioconductor version: 3.3
This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).
Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>
Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>
Citation (from within R,
enter citation("OCplus")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OCplus")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OCplus")
| R Script | OCplus Introduction | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (10.5 years) |
| License | LGPL |
| Depends | R (>= 2.1.0), akima |
| Imports | multtest(>= 1.7.3), graphics, grDevices, stats |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OCplus_1.46.0.tar.gz |
| Windows Binary | OCplus_1.46.0.zip |
| Mac OS X 10.9 (Mavericks) | OCplus_1.46.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OCplus/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/OCplus/ |
| Package Downloads Report | Download Stats |
Documentation »
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