To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotifDb")

In most cases, you don't need to download the package archive at all.

MotifDb

   

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see MotifDb.

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: 3.3

More than 2000 annotated position frequency matrices from nine public sources, for multiple organisms.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("MotifDb")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MotifDb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")

 

PDF R Script %%MotifDb Overview
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews MotifAnnotation, Software
Version 1.14.0
In Bioconductor since BioC 2.11 (R-2.15) (4 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 2.15.0), methods, BiocGenerics, S4Vectors, IRanges, Biostrings
Imports rtracklayer
LinkingTo
Suggests RUnit, seqLogo, MotIV
SystemRequirements
Enhances
URL
Depends On Me motifbreakR
Imports Me rTRMui
Suggests Me DiffLogo, MMDiff2, motifStack, profileScoreDist, PWMEnrich, rTRM, vtpnet
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MotifDb_1.14.0.tar.gz
Windows Binary MotifDb_1.14.0.zip
Mac OS X 10.9 (Mavericks) MotifDb_1.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MotifDb/tree/release-3.3
Package Short Url http://bioconductor.org/packages/MotifDb/
Package Downloads Report Download Stats

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