calcVarPart | Compute variance statistics |
calcVarPart-method | Compute variance statistics |
canCorPairs | canCorPairs |
colinearityScore | Collinearity score |
ESS | Effective sample size |
ESS-method | Effective sample size |
extractVarPart | Extract variance statistics |
fitExtractVarPartModel | Fit linear (mixed) model, report variance fractions |
fitExtractVarPartModel-method | Fit linear (mixed) model, report variance fractions |
fitVarPartModel | Fit linear (mixed) model |
fitVarPartModel-method | Fit linear (mixed) model |
geneCounts | Simulation dataset for examples |
geneExpr | Simulation dataset for examples |
getVarianceComponents | Extract variance terms |
ggColorHue | Default colors for ggplot |
info | Simulation dataset for examples |
plotCorrMatrix | plotCorrMatrix |
plotCorrStructure | plotCorrStructure |
plotPercentBars | Bar plot of variance fractions |
plotStratify | plotStratify |
plotStratifyBy | plotStratifyBy |
plotVarPart | Violin plot of variance fractions |
plotVarPart-method | Violin plot of variance fractions |
residuals | Residuals from model fit |
residuals-method | Residuals from model fit |
sortCols | Sort variance partition statistics |
sortCols-method | Sort variance partition statistics |
varPartConfInf | Linear mixed model confidence intervals |
varPartData | Simulation dataset for examples |