survcomp-package |
Performance Assessment and Comparison for Survival Analysis |
breastCancerData |
Sample data containing six datasets for gene expression, annotations and clinical data. |
censor.time |
Function to artificially censor survival data |
cindex.comp |
Function to compare two concordance indices |
cindex.comp.meta |
Function to compare two concordance indices |
combine.est |
Function to combine estimates |
combine.test |
Function to combine probabilities |
concordance.index |
Function to compute the concordance index for survival or binary class prediction |
cvpl |
Function to compute the CVPL |
D.index |
Function to compute the D index |
dindex.comp |
Function to compare two D indices |
dindex.comp.meta |
Function to compare two D indices |
fisherz |
Function to compute Fisher z transformation |
forestplot.surv |
Forest plots enables to display performance estimates of survival models |
getsurv2 |
Function to retrieve the survival probabilities at a specific point in time |
hazard.ratio |
Function to estimate the hazard ratio through Cox regression |
hr.comp |
Function to statistically compare two hazard ratios |
hr.comp.meta |
Function to compare two concordance indices |
hr.comp2 |
Function to statistically compare two hazard ratios (alternative interface) |
iauc.comp |
Function to compare two IAUCs through time-dependent ROC curves |
ibsc.comp |
Function to compare two IBSCs |
km.coxph.plot |
Function to plot several Kaplan-Meier survival curves |
logpl |
Function to compute the log partial likelihood of a Cox model |
mainz7g |
Subset of MAINZ dataset containing gene expression, annotations and clinical data. |
metaplot.surv |
Meta-analysis plot (forest plot) |
mrmr.cindex |
Function to compute the concordance index for survival or binary class prediction |
mrmr.cindex.ensemble |
Function to compute the concordance index for survival or binary class prediction |
nki7g |
Subset of NKI dataset containing gene expression, annotations and clinical data. |
no.at.risk |
Function to compute the number of individuals at risk |
sbrier.score2proba |
Function to compute the BSCs from a risk score, for all the times of event occurrence |
score2proba |
Function to compute the survival probabilities from a risk score |
survcomp |
Performance Assessment and Comparison for Survival Analysis |
td.sens.spec |
Function to compute sensitivity and specificity for a binary classification of survival data |
tdrocc |
Function to compute time-dependent ROC curves |
test.hetero.est |
Function to test the heterogeneity of set of probabilities |
test.hetero.test |
Function to test the heterogeneity of set of probabilities |
transbig7g |
Subset of the TRANSBIG dataset containing gene expression, annotations and clinical data. |
unt7g |
Subset of UNT dataset containing gene expression, annotations and clinical data. |
upp7g |
Subset of UPP dataset containing gene expression, annotations and clinical data. |
vdx7g |
Subset of VDX dataset containing gene expression, annotations and clinical data. |