Gene signature generation for functionally validated signaling pathways


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Documentation for package ‘sigsquared’ version 1.4.0

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analysisPipeline Training of thresholds
analysisPipeline-method Class '"geneSignature"'
BrCa443 Breast Cancer 443 Data Set
ensembleAdjustable Application of geneSignature object
ensembleAdjustable-method Class '"geneSignature"'
geneSignature-class Class '"geneSignature"'
getDirect geneSignature functions
getDirect-method Class '"geneSignature"'
getGenes geneSignature functions
getGenes-method Class '"geneSignature"'
getNGenes geneSignature functions
getNGenes-method Class '"geneSignature"'
getThresholds geneSignature functions
getThresholds-method Class '"geneSignature"'
setDirect geneSignature functions
setDirect-method Class '"geneSignature"'
setGenes geneSignature functions
setGenes-method Class '"geneSignature"'
setGeneSignature geneSignature functions
setGeneSignature-method Class '"geneSignature"'
setThresholds geneSignature functions
setThresholds-method Class '"geneSignature"'
sigsquared The sigsquared package