R support for SBML, using libsbml


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Documentation for package ‘rsbml’ version 2.30.0

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A B C D E F G H I K L M N O P Q R S T U V W X Y Z misc

-- A --

acot MathML Utilities
acoth MathML Utilities
acsc MathML Utilities
acsch MathML Utilities
additionalGraphicalObjects SBML type "Layout"
additionalGraphicalObjects-method SBML type "Layout"
additionalGraphicalObjects<- SBML type "Layout"
additionalGraphicalObjects<--method SBML type "Layout"
AlgebraicRule-class SBML type "AlgebraicRule"
annotation SBML type "SBase"
annotation-method SBML type "SBase"
annotation<- SBML type "SBase"
annotation<--method SBML type "SBase"
as.character.SBML SBML type "SBML"
as.character.SBMLDocument "SBMLDocument" from libsbml
as.ts-method SOSResult
asec MathML Utilities
asech MathML Utilities
AssignmentRule-class SBML type "AssignmentRule"

-- B --

basePoint1 SBML type "CubicBezier"
basePoint1-method SBML type "CubicBezier"
basePoint1<- SBML type "CubicBezier"
basePoint1<--method SBML type "CubicBezier"
basePoint2 SBML type "CubicBezier"
basePoint2-method SBML type "CubicBezier"
basePoint2<- SBML type "CubicBezier"
basePoint2<--method SBML type "CubicBezier"
biologicalQualifierType SBML Type "CVTerm"
biologicalQualifierType-method SBML Type "CVTerm"
biologicalQualifierType<- SBML Type "CVTerm"
biologicalQualifierType<--method SBML Type "CVTerm"
boundaryCondition SBML type "Species"
boundaryCondition-method SBML type "Species"
boundaryCondition<- SBML type "Species"
boundaryCondition<--method SBML type "Species"
boundingBox SBML type "GraphicalObject"
BoundingBox-class SBML type "BoundingBox"
boundingBox-method SBML type "GraphicalObject"
boundingBox<- SBML type "GraphicalObject"
boundingBox<--method SBML type "GraphicalObject"

-- C --

charge SBML type "Species"
charge-method SBML type "Species"
charge<- SBML type "Species"
charge<--method SBML type "Species"
coerce SBML type "SBML"
coerce-method SBML type "SBML"
coerce-method "SBMLDocument" from libsbml
compartment SBML type "Species"
Compartment-class SBML type "Compartment"
compartment-method SBML type "CompartmentGlyph"
compartment-method SBML type "CompartmentVolumeRule"
compartment-method SBML type "Species"
compartment<- SBML type "Species"
compartment<--method SBML type "CompartmentGlyph"
compartment<--method SBML type "CompartmentVolumeRule"
compartment<--method SBML type "Species"
CompartmentGlyph-class SBML type "CompartmentGlyph"
compartmentGlyphs SBML type "Layout"
compartmentGlyphs-method SBML type "Layout"
compartmentGlyphs<- SBML type "Layout"
compartmentGlyphs<--method SBML type "Layout"
compartments SBML type "Model"
compartments-method SBML type "Model"
compartments-method SOSResult
compartments<- SBML type "Model"
compartments<--method SBML type "Model"
CompartmentType-class SBML Type "CompartmentType"
compartmentTypes SBML type "Model"
compartmentTypes-method SBML type "Model"
compartmentTypes<- SBML type "Model"
compartmentTypes<--method SBML type "Model"
CompartmentVolumeRule-class SBML type "CompartmentVolumeRule"
constant SBML type "Species"
constant-method SBML type "Compartment"
constant-method SBML type "Parameter"
constant-method SBML type "Species"
constant<- SBML type "Species"
constant<--method SBML type "Compartment"
constant<--method SBML type "Parameter"
constant<--method SBML type "Species"
Constraint-class SBML Type "Constraint"
constraints SBML type "Model"
constraints-method SBML type "Model"
constraints<- SBML type "Model"
constraints<--method SBML type "Model"
cot MathML Utilities
coth MathML Utilities
createdDate SBML Type "ModelHistory"
createdDate-method SBML Type "ModelHistory"
createdDate<- SBML Type "ModelHistory"
createdDate<--method SBML Type "ModelHistory"
creators SBML Type "ModelHistory"
creators-method SBML Type "ModelHistory"
creators<- SBML Type "ModelHistory"
creators<--method SBML Type "ModelHistory"
csc MathML Utilities
csch MathML Utilities
CubicBezier-class SBML type "CubicBezier"
Curve-class SBML type "Curve"
curveSegments SBML type "Curve"
curveSegments-method SBML type "Curve"
curveSegments<- SBML type "Curve"
curveSegments<--method SBML type "Curve"
CVTerm-class SBML Type "CVTerm"
cvTerms SBML type "SBase"
cvTerms-method SBML type "SBase"
cvTerms<- SBML type "SBase"
cvTerms<--method SBML type "SBase"

-- D --

Delay-class SBML Type "Delay"
depth SBML type "Dimensions"
depth-method SBML type "Dimensions"
depth<- SBML type "Dimensions"
depth<--method SBML type "Dimensions"
Describable-class Describing objects
describe Describing objects
describe-method Describing objects
describe-methods Describing objects
design Experiment
design-method Experiment
design<- Experiment
design<--method Experiment
dimensions SBML type "Layout"
Dimensions-class SBML type "Dimensions"
dimensions-method SBML type "BoundingBox"
dimensions-method SBML type "Layout"
dimensions<- SBML type "Layout"
dimensions<--method SBML type "BoundingBox"
dimensions<--method SBML type "Layout"

-- E --

email SBML Type "ModelCreator"
email-method SBML Type "ModelCreator"
email<- SBML Type "ModelCreator"
email<--method SBML Type "ModelCreator"
end SBML type "LineSegment"
end-method SBML type "LineSegment"
end<- SBML type "LineSegment"
end<--method SBML type "LineSegment"
errors SBMLProblems
errors-method SBMLProblems
Event-class SBML type "Event"
EventAssignment-class SBML type "EventAssignment"
eventAssignments SBML type "Event"
eventAssignments-method SBML type "Event"
eventAssignments<- SBML type "Event"
eventAssignments<--method SBML type "Event"
eventDelay SBML type "Event"
eventDelay-method SBML type "Event"
eventDelay<- SBML type "Event"
eventDelay<--method SBML type "Event"
events SBML type "Model"
events-method SBML type "Model"
events<- SBML type "Model"
events<--method SBML type "Model"
Experiment-class Experiment
ExperimentDesign-class Experiment
ExperimentProtocol-class Experiment
ExperimentResult-class Experiment
ExperimentSubject-class Experiment
exponent SBML type "Unit"
exponent-method SBML type "Unit"
exponent<- SBML type "Unit"
exponent<--method SBML type "Unit"

-- F --

familyName SBML Type "ModelCreator"
familyName-method SBML Type "ModelCreator"
familyName<- SBML Type "ModelCreator"
familyName<--method SBML Type "ModelCreator"
fast SBML type "Reaction"
fast-method SBML type "Reaction"
fast<- SBML type "Reaction"
fast<--method SBML type "Reaction"
fatals SBMLProblems
fatals-method SBMLProblems
FunctionDefinition-class SBML type "FunctionDefinition"
functionDefinitions SBML type "Model"
functionDefinitions-method SBML type "Model"
functionDefinitions<- SBML type "Model"
functionDefinitions<--method SBML type "Model"

-- G --

givenName SBML Type "ModelCreator"
givenName-method SBML Type "ModelCreator"
givenName<- SBML Type "ModelCreator"
givenName<--method SBML Type "ModelCreator"
glyphCurve SBML type "ReactionGlyph"
glyphCurve-method SBML type "ReactionGlyph"
glyphCurve-method SBML type "SpeciesReferenceGlyph"
glyphCurve<- SBML type "ReactionGlyph"
glyphCurve<--method SBML type "ReactionGlyph"
glyphCurve<--method SBML type "SpeciesReferenceGlyph"
graphicalObject SBML type "TextGlyph"
GraphicalObject-class SBML type "GraphicalObject"
graphicalObject-method SBML type "TextGlyph"
graphicalObject<- SBML type "TextGlyph"
graphicalObject<--method SBML type "TextGlyph"

-- H --

hasOnlySubstanceUnits SBML type "Species"
hasOnlySubstanceUnits-method SBML type "Species"
hasOnlySubstanceUnits<- SBML type "Species"
hasOnlySubstanceUnits<--method SBML type "Species"
height SBML type "Dimensions"
height-method SBML type "Dimensions"
height<- SBML type "Dimensions"
height<--method SBML type "Dimensions"

-- I --

id SBML type "UnitDefinition"
id-method SBML type "BoundingBox"
id-method SBML type "Compartment"
id-method SBML Type "CompartmentType"
id-method SBML type "Event"
id-method SBML type "FunctionDefinition"
id-method SBML type "GraphicalObject"
id-method SBML type "Layout"
id-method SBML type "Model"
id-method SBML type "Parameter"
id-method SBML type "Reaction"
id-method SBML type "SimpleSpeciesReference"
id-method SBML type "Species"
id-method SBML Type "SpeciesType"
id-method SBML type "UnitDefinition"
id<- SBML type "UnitDefinition"
id<--method SBML type "BoundingBox"
id<--method SBML type "Compartment"
id<--method SBML Type "CompartmentType"
id<--method SBML type "Event"
id<--method SBML type "FunctionDefinition"
id<--method SBML type "GraphicalObject"
id<--method SBML type "Layout"
id<--method SBML type "Model"
id<--method SBML type "Parameter"
id<--method SBML type "Reaction"
id<--method SBML type "SimpleSpeciesReference"
id<--method SBML type "Species"
id<--method SBML Type "SpeciesType"
id<--method SBML type "UnitDefinition"
infos SBMLProblems
infos-method SBMLProblems
initialAmount SBML type "Species"
initialAmount-method SBML type "Species"
initialAmount<- SBML type "Species"
initialAmount<--method SBML type "Species"
InitialAssignment-class SBML Type "InitialAssignment"
initialAssignments SBML type "Model"
initialAssignments-method SBML type "Model"
initialAssignments<- SBML type "Model"
initialAssignments<--method SBML type "Model"
initialConcentration SBML type "Species"
initialConcentration-method SBML type "Species"
initialConcentration<- SBML type "Species"
initialConcentration<--method SBML type "Species"

-- K --

kind SBML type "Unit"
kind-method SBML type "Unit"
kind<- SBML type "Unit"
kind<--method SBML type "Unit"
kineticLaw SBML type "Reaction"
KineticLaw-class SBML type "KineticLaw"
kineticLaw-method SBML type "Reaction"
kineticLaw<- SBML type "Reaction"
kineticLaw<--method SBML type "Reaction"

-- L --

Layout-class SBML type "Layout"
layouts SBML type "Model"
layouts-method SBML type "Model"
layouts<- SBML type "Model"
layouts<--method SBML type "Model"
level SBML type "SBML"
level-method SBML type "SBML"
level<- SBML type "SBML"
level<--method SBML type "SBML"
LineSegment-class SBML type "LineSegment"

-- M --

math SBML type "KineticLaw"
math-method SBML Type "Constraint"
math-method SBML Type "Delay"
math-method SBML type "EventAssignment"
math-method SBML type "FunctionDefinition"
math-method SBML Type "InitialAssignment"
math-method SBML type "KineticLaw"
math-method SBML type "ParameterRule"
math-method SBML type "Rule"
math-method SBML type "StoichiometryMath"
math-method SBML Type "Trigger"
math<- SBML type "KineticLaw"
math<--method SBML Type "Constraint"
math<--method SBML Type "Delay"
math<--method SBML type "EventAssignment"
math<--method SBML type "FunctionDefinition"
math<--method SBML Type "InitialAssignment"
math<--method SBML type "KineticLaw"
math<--method SBML type "ParameterRule"
math<--method SBML type "Rule"
math<--method SBML type "StoichiometryMath"
math<--method SBML Type "Trigger"
metaId SBML type "SBase"
metaId-method SBML type "SBase"
metaId<- SBML type "SBase"
metaId<--method SBML type "SBase"
model SBML type "SBML"
Model-class SBML type "Model"
model-method SBML type "SBML"
model<- SBML type "SBML"
model<--method SBML type "SBML"
ModelCreator-class SBML Type "ModelCreator"
modelHistory SBML type "Model"
ModelHistory-class SBML Type "ModelHistory"
modelHistory-method SBML type "Model"
modelHistory<- SBML type "Model"
modelHistory<--method SBML type "Model"
modelQualifierType SBML Type "CVTerm"
modelQualifierType-method SBML Type "CVTerm"
modelQualifierType<- SBML Type "CVTerm"
modelQualifierType<--method SBML Type "CVTerm"
modifiedDate SBML Type "ModelHistory"
modifiedDate-method SBML Type "ModelHistory"
modifiedDate<- SBML Type "ModelHistory"
modifiedDate<--method SBML Type "ModelHistory"
modifiers SBML type "Reaction"
modifiers-method SBML type "Reaction"
modifiers<- SBML type "Reaction"
modifiers<--method SBML type "Reaction"
ModifierSpeciesReference-class SBML type "ModifierSpeciesReference"
msg SBML Type "Constraint"
msg-method SBML Type "Constraint"
msg<- SBML Type "Constraint"
msg<--method SBML Type "Constraint"
multiplier SBML type "Unit"
multiplier-method SBML type "Unit"
multiplier<- SBML type "Unit"
multiplier<--method SBML type "Unit"

-- N --

name SBML type "UnitDefinition"
name-method SBML type "Compartment"
name-method SBML Type "CompartmentType"
name-method SBML type "Event"
name-method SBML type "FunctionDefinition"
name-method SBML type "Model"
name-method SBML type "Parameter"
name-method SBML type "ParameterRule"
name-method SBML type "Reaction"
name-method SBML type "Species"
name-method SBML Type "SpeciesType"
name-method SBML type "UnitDefinition"
name<- SBML type "UnitDefinition"
name<--method SBML type "Compartment"
name<--method SBML Type "CompartmentType"
name<--method SBML type "Event"
name<--method SBML type "FunctionDefinition"
name<--method SBML type "Model"
name<--method SBML type "Parameter"
name<--method SBML type "ParameterRule"
name<--method SBML type "Reaction"
name<--method SBML type "Species"
name<--method SBML Type "SpeciesType"
name<--method SBML type "UnitDefinition"
notes SBML type "SBase"
notes-method SBML type "SBase"
notes<- SBML type "SBase"
notes<--method SBML type "SBase"

-- O --

offset SBML type "Unit"
offset-method SBML type "Unit"
offset<- SBML type "Unit"
offset<--method SBML type "Unit"
OptionalCurve-class SBML type "Curve"
OptionalDelay-class SBML Type "Delay"
OptionalKineticLaw-class SBML type "KineticLaw"
OptionalModelHistory-class SBML Type "ModelHistory"
OptionalStoichiometryMath-class SBML type "StoichiometryMath"
organization SBML Type "ModelCreator"
organization-method SBML Type "ModelCreator"
organization<- SBML Type "ModelCreator"
organization<--method SBML Type "ModelCreator"
originOfText SBML type "TextGlyph"
originOfText-method SBML type "TextGlyph"
originOfText<- SBML type "TextGlyph"
originOfText<--method SBML type "TextGlyph"
outside SBML type "Compartment"
outside-method SBML type "Compartment"
outside<- SBML type "Compartment"
outside<--method SBML type "Compartment"

-- P --

Parameter-class SBML type "Parameter"
ParameterRule-class SBML type "ParameterRule"
parameters SBML type "Model"
parameters-method SBML type "KineticLaw"
parameters-method SBML type "Model"
parameters-method SOSResult
parameters<- SBML type "Model"
parameters<--method SBML type "KineticLaw"
parameters<--method SBML type "Model"
Point-class SBML type "Point"
position SBML type "BoundingBox"
position-method SBML type "BoundingBox"
position<- SBML type "BoundingBox"
position<--method SBML type "BoundingBox"
products SBML type "Reaction"
products-method SBML type "Reaction"
products<- SBML type "Reaction"
products<--method SBML type "Reaction"
protocol Experiment
protocol-method Experiment
protocol<- Experiment
protocol<--method Experiment

-- Q --

qualifierType SBML Type "CVTerm"
qualifierType-method SBML Type "CVTerm"
qualifierType<- SBML Type "CVTerm"
qualifierType<--method SBML Type "CVTerm"

-- R --

RateRule-class SBML type "RateRule"
reactants SBML type "Reaction"
reactants-method SBML type "Reaction"
reactants<- SBML type "Reaction"
reactants<--method SBML type "Reaction"
reaction SBML type "ReactionGlyph"
Reaction-class SBML type "Reaction"
reaction-method SBML type "ReactionGlyph"
reaction<- SBML type "ReactionGlyph"
reaction<--method SBML type "ReactionGlyph"
ReactionGlyph-class SBML type "ReactionGlyph"
reactionGlyphs SBML type "Layout"
reactionGlyphs-method SBML type "Layout"
reactionGlyphs<- SBML type "Layout"
reactionGlyphs<--method SBML type "Layout"
reactions SBML type "Model"
reactions-method SBML type "Model"
reactions-method SOSDesign
reactions-method SOSResult
reactions<- SBML type "Model"
reactions<--method Experiment
reactions<--method SBML type "Model"
reactions<--method SOSDesign
resources SBML Type "CVTerm"
resources-method SBML Type "CVTerm"
resources<- SBML Type "CVTerm"
resources<--method SBML Type "CVTerm"
result Experiment
result-method Experiment
result<- Experiment
result<--method Experiment
reversible SBML type "Reaction"
reversible-method SBML type "Reaction"
reversible<- SBML type "Reaction"
reversible<--method SBML type "Reaction"
role SBML type "SpeciesReferenceGlyph"
role-method SBML type "SpeciesReferenceGlyph"
role<- SBML type "SpeciesReferenceGlyph"
role<--method SBML type "SpeciesReferenceGlyph"
rsbml_check "SBMLDocument" from libsbml
rsbml_check-method SBML type "SBML"
rsbml_check-method "SBMLDocument" from libsbml
rsbml_doc SBML type "SBML"
rsbml_doc-method SBML type "SBML"
rsbml_dom "SBMLDocument" from libsbml
rsbml_dom-method "SBMLDocument" from libsbml
rsbml_graph "SBMLDocument" from libsbml
rsbml_graph-method SBML type "SBML"
rsbml_graph-method "SBMLDocument" from libsbml
rsbml_problems "SBMLDocument" from libsbml
rsbml_problems-method "SBMLDocument" from libsbml
rsbml_read Read in an SBML file (start here)
rsbml_write SBML type "SBML"
rsbml_write-method SBML type "SBML"
rsbml_write-method "SBMLDocument" from libsbml
rsbml_xml SBML type "SBML"
rsbml_xml-method SBML type "SBML"
rsbml_xml-method "SBMLDocument" from libsbml
Rule-class SBML type "Rule"
rules SBML type "Model"
rules-method SBML type "Model"
rules<- SBML type "Model"
rules<--method SBML type "Model"

-- S --

SBase-class SBML type "SBase"
SBML-class SBML type "SBML"
SBMLDocument-class "SBMLDocument" from libsbml
SBMLError-class SBMLProblem
SBMLFatal-class SBMLProblem
SBMLInfo-class SBMLProblem
SBMLProblem-class SBMLProblem
SBMLProblems-class SBMLProblems
SBMLWarning-class SBMLProblem
sboTerm SBML type "SBase"
sboTerm-method SBML type "SBase"
sboTerm<- SBML type "SBase"
sboTerm<--method SBML type "SBase"
sec MathML Utilities
sech MathML Utilities
show-method Describing objects
show-method SBMLProblem
SimpleSpeciesReference-class SBML type "SimpleSpeciesReference"
simulate SOS Experiment
simulate-method SBML type "SBML"
simulate-method "SBMLDocument" from libsbml
simulate-method SOS Experiment
size SBML type "Compartment"
size-method SBML type "Compartment"
size<- SBML type "Compartment"
size<--method SBML type "Compartment"
SOSDesign-class SOSDesign
SOSExperiment-class SOS Experiment
SOSProtocol-class SOSProtocol
SOSResult-class SOSResult
SOSSubject-class SOSSubject
spatialDimensions SBML type "Compartment"
spatialDimensions-method SBML type "Compartment"
spatialDimensions<- SBML type "Compartment"
spatialDimensions<--method SBML type "Compartment"
spatialSizeUnits SBML type "Species"
spatialSizeUnits-method SBML type "Species"
spatialSizeUnits<- SBML type "Species"
spatialSizeUnits<--method SBML type "Species"
species SBML type "SpeciesGlyph"
Species-class SBML type "Species"
species-method SBML type "Model"
species-method SOSResult
species-method SBML type "SimpleSpeciesReference"
species-method SBML type "SpeciesConcentrationRule"
species-method SBML type "SpeciesGlyph"
species<- SBML type "SpeciesGlyph"
species<--method SBML type "Model"
species<--method SBML type "SimpleSpeciesReference"
species<--method SBML type "SpeciesConcentrationRule"
species<--method SBML type "SpeciesGlyph"
SpeciesConcentrationRule-class SBML type "SpeciesConcentrationRule"
speciesGlyph SBML type "SpeciesReferenceGlyph"
SpeciesGlyph-class SBML type "SpeciesGlyph"
speciesGlyph-method SBML type "SpeciesReferenceGlyph"
speciesGlyph<- SBML type "SpeciesReferenceGlyph"
speciesGlyph<--method SBML type "SpeciesReferenceGlyph"
speciesGlyphs SBML type "Layout"
speciesGlyphs-method SBML type "Layout"
speciesGlyphs<- SBML type "Layout"
speciesGlyphs<--method SBML type "Layout"
speciesReference SBML type "SpeciesReferenceGlyph"
SpeciesReference-class SBML type "SpeciesReference"
speciesReference-method SBML type "SpeciesReferenceGlyph"
speciesReference<- SBML type "SpeciesReferenceGlyph"
speciesReference<--method SBML type "SpeciesReferenceGlyph"
SpeciesReferenceGlyph-class SBML type "SpeciesReferenceGlyph"
speciesReferenceGlyphs SBML type "ReactionGlyph"
speciesReferenceGlyphs-method SBML type "ReactionGlyph"
speciesReferenceGlyphs<- SBML type "ReactionGlyph"
speciesReferenceGlyphs<--method SBML type "ReactionGlyph"
SpeciesType-class SBML Type "SpeciesType"
speciesTypes SBML type "Model"
speciesTypes-method SBML type "Model"
speciesTypes<- SBML type "Model"
speciesTypes<--method SBML type "Model"
start SBML type "LineSegment"
start-method SBML type "LineSegment"
start<- SBML type "LineSegment"
start<--method SBML type "LineSegment"
stoichiometry SBML type "SpeciesReference"
stoichiometry-method SBML type "SpeciesReference"
stoichiometry<- SBML type "SpeciesReference"
stoichiometry<--method SBML type "SpeciesReference"
stoichiometryMath SBML type "SpeciesReference"
StoichiometryMath-class SBML type "StoichiometryMath"
stoichiometryMath-method SBML type "SpeciesReference"
stoichiometryMath<- SBML type "SpeciesReference"
stoichiometryMath<--method SBML type "SpeciesReference"
stoichiometryMatrix SBML type "Model"
stoichiometryMatrix-method SBML type "Model"
subject Experiment
subject-method Experiment
subject<- Experiment
subject<--method Experiment
substanceUnits SBML type "KineticLaw"
substanceUnits-method SBML type "KineticLaw"
substanceUnits-method SBML type "Species"
substanceUnits<- SBML type "KineticLaw"
substanceUnits<--method SBML type "KineticLaw"
substanceUnits<--method SBML type "Species"
symbol SBML Type "InitialAssignment"
symbol-method SBML Type "InitialAssignment"
symbol<- SBML Type "InitialAssignment"
symbol<--method SBML Type "InitialAssignment"

-- T --

text SBML type "TextGlyph"
text-method SBML type "TextGlyph"
text<- SBML type "TextGlyph"
text<--method SBML type "TextGlyph"
TextGlyph-class SBML type "TextGlyph"
textGlyphs SBML type "Layout"
textGlyphs-method SBML type "Layout"
textGlyphs<- SBML type "Layout"
textGlyphs<--method SBML type "Layout"
timeUnits SBML type "KineticLaw"
timeUnits-method SBML type "Event"
timeUnits-method SBML type "KineticLaw"
timeUnits<- SBML type "KineticLaw"
timeUnits<--method SBML type "Event"
timeUnits<--method SBML type "KineticLaw"
trigger SBML type "Event"
Trigger-class SBML Type "Trigger"
trigger-method SBML type "Event"
trigger<- SBML type "Event"
trigger<--method SBML type "Event"
type SBML type "AssignmentRule"
type-method SBML type "AssignmentRule"
type-method SBML type "ParameterRule"
type<- SBML type "AssignmentRule"
type<--method SBML type "AssignmentRule"
type<--method SBML type "ParameterRule"

-- U --

Unit-class SBML type "Unit"
UnitDefinition-class SBML type "UnitDefinition"
unitDefinitions SBML type "Model"
unitDefinitions-method SBML type "Model"
unitDefinitions<- SBML type "Model"
unitDefinitions<--method SBML type "Model"
units SBML type "UnitDefinition"
units-method SBML type "Compartment"
units-method SBML type "Parameter"
units-method SBML type "ParameterRule"
units-method SBML type "Species"
units-method SBML type "UnitDefinition"
units<- SBML type "UnitDefinition"
units<--method SBML type "Compartment"
units<--method SBML type "Parameter"
units<--method SBML type "ParameterRule"
units<--method SBML type "Species"
units<--method SBML type "UnitDefinition"
unitScale SBML type "Unit"
unitScale-method SBML type "Unit"
unitScale<- SBML type "Unit"
unitScale<--method SBML type "Unit"

-- V --

value SBML type "Parameter"
value-method SBML type "Parameter"
value<- SBML type "Parameter"
value<--method SBML type "Parameter"
variable SBML type "RateRule"
variable-method SBML type "AssignmentRule"
variable-method SBML type "EventAssignment"
variable-method SBML type "ParameterRule"
variable-method SBML type "RateRule"
variable<- SBML type "RateRule"
variable<--method SBML type "AssignmentRule"
variable<--method SBML type "EventAssignment"
variable<--method SBML type "ParameterRule"
variable<--method SBML type "RateRule"
ver SBML type "SBML"
ver-method SBML type "SBML"
ver<- SBML type "SBML"
ver<--method SBML type "SBML"

-- W --

warns SBMLProblems
warns-method SBMLProblems
width SBML type "Dimensions"
width-method SBML type "Dimensions"
width<- SBML type "Dimensions"
width<--method SBML type "Dimensions"

-- X --

x SBML type "Point"
x-method SBML type "Point"
x<- SBML type "Point"
x<--method SBML type "Point"

-- Y --

y SBML type "Point"
y-method SBML type "Point"
y<- SBML type "Point"
y<--method SBML type "Point"

-- Z --

z SBML type "Point"
z-method SBML type "Point"
z<- SBML type "Point"
z<--method SBML type "Point"

-- misc --

.condition-method SBMLProblem
.throw-method SBMLProblem
.throw-method SBMLProblems