psygenet2r-package |
psygenet2r: Package to query PsyGeNET database and to perform comorbidity studies |
DataGeNET.Psy-class |
Class DataGeNET.Psy |
enrichedPD |
Enrichment of a user's input (genes) in PsyGeNET's diseases. |
extract |
Raw data from 'DataGeNET.Psy' and 'JaccardIndexPsy'. |
extract-method |
Raw data from 'DataGeNET.Psy' and 'JaccardIndexPsy'. |
extractSentences |
Method to obtain the evidences from a 'DataGeNET.Psy' object. |
extractSentences-method |
Method to obtain the evidences from a 'DataGeNET.Psy' object. |
geneAttrPlot |
Ploting the relation between genes and disease-categories |
getUMLs |
Query PsyGeNET for given gene(s) and generates an 'DataGeNET.Psy' |
jaccardEstimation |
Calculation of the Jaccard Index between ideseases |
JaccardIndexPsy-class |
Class JaccardIndexPsy |
ndisease |
Getter from 'DataGeNET.Psy'. |
ndisease-method |
Getter from 'DataGeNET.Psy'. |
ngene |
Getter from 'DataGeNET.Psy'. |
ngene-method |
Getter from 'DataGeNET.Psy'. |
pantherGraphic |
Query PsyGeNET for given genes and creates a representation in base of their panther-class |
plot-method |
Plots the content of a 'DataGeNET.Psy' or 'JaccardIndexPsy' object. |
plot-method |
Plot the content of a 'JaccardIndexPsy' object. |
psygenet2r |
psygenet2r: Package to query PsyGeNET database and to perform comorbidity studies |
psygenetDisease |
Query PsyGeNET for given disease(s) and generates an 'DataGeNET.Psy' |
psygenetDiseaseSentences |
Query PsyGeNET for given disease(s) and extract the pmids sentences that report a gene-disease asssociation. |
psygenetGene |
Query PsyGeNET for given gene(s) and generates an 'DataGeNET.Psy' |
psygenetGeneSentences |
Query PsyGeNET for given gene(s) and extract the pmids sentences that report a gene-disease asssociation. |
qr |
'DataGeNET.Psy' obtained from quering PsyGeNET for gene '4852'. |
topAnatEnrichment |
Enrichment of a user's input (genes) in anatomical terms (TopAnat). |