pcaExplorer-package |
pcaExplorer: analyzing time-lapse microscopy imaging, from detection to tracking |
correlatePCs |
Principal components (cor)relation with experimental covariates |
genespca |
Principal components analysis on the genes |
hi_loadings |
Extract genes with highest loadings |
limmaquickpca2go |
Functional interpretation of the principal components, based on simple overrepresentation analysis |
makeExampleDESeqDataSet_multifac |
Make a simulated DESeqDataSet for two or more experimental factors |
pca2go |
Functional interpretation of the principal components |
pcaExplorer |
pcaExplorer: analyzing time-lapse microscopy imaging, from detection to tracking |
pcaplot |
Sample PCA plot for transformed data |
pcascree |
Scree plot of the PCA on the samples |
plotPCcorrs |
Plot significance of (cor)relations of covariates VS principal components |
topGOtable |
Extract functional terms enriched in the DE genes, based on topGO |