# ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.

## Documentation for package ‘ncdfFlow’ version 2.18.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ncdfFlow-package | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
as.flowSet | convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet | Clone a ncdfFlowSet
colnames-method | Accessors compatible with those for 'flowSet'
colnames<- | Accessors compatible with those for 'flowSet'
colnames<--method | Accessors compatible with those for 'flowSet'
compensate-method | Accessors compatible with those for 'flowSet'
densityplot-method | flowViz plot methods.
filter-method | Accessors compatible with those for 'flowSet'
getFileName | get the cdf file name associated with ncdfFlowSet object
getIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
getIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
histogram-method | flowViz plot methods.
initIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
initIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
lapply-method | lapply method for ncdfFlowList
length-method | Accessors compatible with those for 'flowSet'
load_ncfs | save/load a ncdfFlowSet object to/from disk.
markernames-method | Accessors compatible with those for 'flowSet'
markernames<--method | Accessors compatible with those for 'flowSet'
ncdfFlow | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
ncdfFlowList | a class that stores multiple ncdfFlowSet objects
ncdfFlowList-class | a class that stores multiple ncdfFlowSet objects
ncdfFlowSet | create ncdfFlowSet from flowSet
ncdfFlowSet-class | a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-method | create ncdfFlowSet from flowSet
ncfsApply | apply method for ncdfFlowSet (for internal use)
ncfsApply-method | apply method for ncdfFlowSet (for internal use)
pData-method | Accessors compatible with those for 'flowSet'
pData<--method | Accessors compatible with those for 'flowSet'
phenoData-method | Accessors compatible with those for 'flowSet'
phenoData<--method | Accessors compatible with those for 'flowSet'
rbind2-method | combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet | create ncdfFlowSet from FCS files
read.ncdfFlowset | create ncdfFlowSet from FCS files
replacement method for ncdfFlowSet | write the flow data from a 'flowFrame' to 'ncdfFlowSet'
sampleNames-method | Accessors compatible with those for 'flowSet'
sampleNames<- | Accessors compatible with those for 'flowSet'
sampleNames<--method | Accessors compatible with those for 'flowSet'
save_ncfs | save/load a ncdfFlowSet object to/from disk.
show | a class for storing flow cytometry raw data in HDF5 format
show-method | a class that stores multiple ncdfFlowSet objects
show-method | a class for storing flow cytometry raw data in HDF5 format
split-method | split a 'ncdfFlowSet' object.
Subset-method | subset a ncdfFlowSet by filter
subset.ncdfFlowList | subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset.ncdfFlowSet | subset the ncdfFlowSet/ncdfFlowList based on 'pData'
transform-method | Accessors compatible with those for 'flowSet'
unlink-method | delete the cdf file associated with the ncdfFlowSet object
updateIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
updateIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
xyplot-method | flowViz plot methods.
[-method | subsetting by sampleNames,channels(not for events) methods
[[-method | extract a 'flowFrame' object from 'ncdfFlowSet'
[[<--method | write the flow data from a 'flowFrame' to 'ncdfFlowSet'