Convert miRNA Names to Different miRBase Versions


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Documentation for package ‘miRNAmeConverter’ version 1.0.2

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miRNAmeConverter-package Handling mature miRNA names from different miRBase versions This package contains algorithms for dealing with mature miRNA names from different miRBase release versions. The functions are provided in form of methods as part of the 'MiRNANameConverter'-class. The data of all the miRBase release versions is stored in the 'miRBaseVersions.db' annotation package. The _MiRNAmeConverter_ package contains one class that has two categories of functions: getters-functions and algorithms.
assessMiRNASwappingMIMAT Check if given miRNA names can be assigned to unique MIMAT accessions among all versions
assessMiRNASwappingMIMAT-method Check if given miRNA names can be assigned to unique MIMAT accessions among all versions
assessVersion Assess miRBase version
assessVersion-method Assess miRBase version
checkMiRNAName Check miRNA names for validity
checkMiRNAName-method Check miRNA names for validity
currentVersion Get current version
currentVersion-method Get current version
currentVersion<- Set current version
example.miRNAs miRNA names.
miRNAmeConverter Handling mature miRNA names from different miRBase versions This package contains algorithms for dealing with mature miRNA names from different miRBase release versions. The functions are provided in form of methods as part of the 'MiRNANameConverter'-class. The data of all the miRBase release versions is stored in the 'miRBaseVersions.db' annotation package. The _MiRNAmeConverter_ package contains one class that has two categories of functions: getters-functions and algorithms.
MiRNANameConverter Instantiate from MiRNANameConverter class
MiRNANameConverter-method MiRNANameConverter constructor
nOrganisms Get number of organisms
nOrganisms-method Get number of organisms
nOrganisms<- Set number of organisms
nTotalEntries Get total number database entries
nTotalEntries-method Get total number database entries
nTotalEntries<- Set total number database entries
saveResults Save miRNA translation results
saveResults-method Save miRNA translation results
show-method Show-method
translateMiRNAName Translate miRNA name
translateMiRNAName-method Translate miRNA name
validOrganisms Get valid organisms
validOrganisms-method Get valid organisms
validOrganisms<- Set valid organisms
validVersions Get valid versions
validVersions-method Get valid versions
validVersions<- Set valid versions