miRNAmeConverter-package | Handling mature miRNA names from different miRBase versions This package contains algorithms for dealing with mature miRNA names from different miRBase release versions. The functions are provided in form of methods as part of the 'MiRNANameConverter'-class. The data of all the miRBase release versions is stored in the 'miRBaseVersions.db' annotation package. The _MiRNAmeConverter_ package contains one class that has two categories of functions: getters-functions and algorithms. |
assessMiRNASwappingMIMAT | Check if given miRNA names can be assigned to unique MIMAT accessions among all versions |
assessMiRNASwappingMIMAT-method | Check if given miRNA names can be assigned to unique MIMAT accessions among all versions |
assessVersion | Assess miRBase version |
assessVersion-method | Assess miRBase version |
checkMiRNAName | Check miRNA names for validity |
checkMiRNAName-method | Check miRNA names for validity |
currentVersion | Get current version |
currentVersion-method | Get current version |
currentVersion<- | Set current version |
example.miRNAs | miRNA names. |
miRNAmeConverter | Handling mature miRNA names from different miRBase versions This package contains algorithms for dealing with mature miRNA names from different miRBase release versions. The functions are provided in form of methods as part of the 'MiRNANameConverter'-class. The data of all the miRBase release versions is stored in the 'miRBaseVersions.db' annotation package. The _MiRNAmeConverter_ package contains one class that has two categories of functions: getters-functions and algorithms. |
MiRNANameConverter | Instantiate from MiRNANameConverter class |
MiRNANameConverter-method | MiRNANameConverter constructor |
nOrganisms | Get number of organisms |
nOrganisms-method | Get number of organisms |
nOrganisms<- | Set number of organisms |
nTotalEntries | Get total number database entries |
nTotalEntries-method | Get total number database entries |
nTotalEntries<- | Set total number database entries |
saveResults | Save miRNA translation results |
saveResults-method | Save miRNA translation results |
show-method | Show-method |
translateMiRNAName | Translate miRNA name |
translateMiRNAName-method | Translate miRNA name |
validOrganisms | Get valid organisms |
validOrganisms-method | Get valid organisms |
validOrganisms<- | Set valid organisms |
validVersions | Get valid versions |
validVersions-method | Get valid versions |
validVersions<- | Set valid versions |